Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   KWZ00_RS11075 Genome accession   NZ_CP078115
Coordinates   2108137..2108586 (+) Length   149 a.a.
NCBI ID   WP_002214937.1    Uniprot ID   A0AA44U8B7
Organism   Neisseria gonorrhoeae strain O1G1370     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2103137..2113586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWZ00_RS12180 - 2107433..2107552 (+) 120 Protein_2166 competence protein ComE -
  KWZ00_RS11070 (KWZ00_11070) comE 2107654..2108049 (+) 396 WP_256347977.1 helix-hairpin-helix domain-containing protein Machinery gene
  KWZ00_RS11075 (KWZ00_11075) comP 2108137..2108586 (+) 450 WP_002214937.1 type IV pilin protein Machinery gene
  KWZ00_RS12185 - 2108593..2108847 (-) 255 WP_020996893.1 hypothetical protein -
  KWZ00_RS11085 (KWZ00_11085) - 2108963..2109109 (-) 147 WP_047919164.1 hypothetical protein -
  KWZ00_RS11090 (KWZ00_11090) - 2109496..2110086 (+) 591 WP_080229150.1 DNA cytosine methyltransferase -
  KWZ00_RS11095 (KWZ00_11095) - 2110125..2110454 (+) 330 WP_002234365.1 DNA cytosine methyltransferase -
  KWZ00_RS12190 - 2110468..2111325 (+) 858 WP_012503917.1 ATP-binding protein -
  KWZ00_RS12195 - 2111515..2112111 (+) 597 WP_012503916.1 TIGR02391 family protein -
  KWZ00_RS11105 (KWZ00_11105) - 2112117..2112539 (+) 423 WP_003691751.1 very short patch repair endonuclease -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16834.81 Da        Isoelectric Point: 9.7951

>NTDB_id=586956 KWZ00_RS11075 WP_002214937.1 2108137..2108586(+) (comP) [Neisseria gonorrhoeae strain O1G1370]
MTDNRGFTLVELISVVLILSVLALIVYPSYRNYVEKAKINAVRAALLENAHFMEKFYLQNGRFKQTSTKWPSLPIKEAEG
FCIRLNGIARGALDSKFMLKAVAIDKDKNPFIIKMNENLVTFICKKSASSCSDGLDYFKGNDKDCKLLK

Nucleotide


Download         Length: 450 bp        

>NTDB_id=586956 KWZ00_RS11075 WP_002214937.1 2108137..2108586(+) (comP) [Neisseria gonorrhoeae strain O1G1370]
ATGACTGATAATCGGGGGTTTACGCTGGTTGAATTAATATCAGTGGTCTTGATATTGTCTGTACTTGCTTTAATTGTTTA
TCCGAGCTATCGCAATTATGTTGAGAAAGCAAAGATAAATGCAGTGCGGGCAGCCTTGTTAGAAAATGCACATTTTATGG
AAAAGTTTTATCTGCAGAATGGGAGATTTAAACAAACATCTACCAAATGGCCAAGTTTGCCGATTAAAGAGGCAGAAGGC
TTTTGTATCCGTTTGAATGGAATCGCGCGCGGGGCTTTAGACAGTAAATTCATGTTGAAGGCGGTAGCCATAGATAAAGA
TAAAAATCCTTTTATTATTAAGATGAATGAAAATCTAGTAACCTTTATTTGCAAGAAGTCCGCCAGTTCGTGTAGTGACG
GGCTGGATTATTTTAAAGGAAATGATAAGGACTGCAAGTTACTTAAGTAG

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-107)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria gonorrhoeae MS11

100

100

1
  comP Neisseria meningitidis 8013

99.329

100

0.993
  comP Neisseria subflava NJ9703

49.66

98.658

0.49