Detailed information NTG0058685

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: K747_RS04005
• Genome accession: NC_021215
• Coordinates: 815303..816439 (+)
• Length: 378 a.a.
• NCBI ID: WP_015645817.1
• Uniprot ID: -
• Organism: Helicobacter pylori UM032
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 810303..821439

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K747_RS03970 (K747_04240)	panD	810722..811072 (+)	351	WP_015645812.1	aspartate 1-decarboxylase	-
K747_RS03975 (K747_04245)	-	811083..811376 (+)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
K747_RS03980 (K747_04250)	-	811376..812371 (+)	996	WP_015645813.1	PDZ domain-containing protein	-
K747_RS03985 (K747_04255)	comB6	812379..813434 (+)	1056	WP_015645814.1	P-type conjugative transfer protein TrbL	Machinery gene
K747_RS03990	comB7	813450..813575 (+)	126	WP_020849792.1	hypothetical protein	Machinery gene
K747_RS03995 (K747_04260)	comB8	813572..814315 (+)	744	WP_015645815.1	virB8 family protein	Machinery gene
K747_RS04000 (K747_04265)	comB9	814315..815310 (+)	996	WP_015645816.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
K747_RS04005 (K747_04270)	comB10	815303..816439 (+)	1137	WP_015645817.1	DNA type IV secretion system protein ComB10	Machinery gene
K747_RS04010 (K747_04275)	-	816505..817917 (+)	1413	WP_015645818.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
K747_RS04015 (K747_04280)	gmd	817932..819077 (+)	1146	WP_015645819.1	GDP-mannose 4,6-dehydratase	-
K747_RS04020 (K747_12760)	-	819070..820002 (+)	933	WP_015645820.1	GDP-L-fucose synthase	-
K747_RS04025 (K747_04290)	hypE	820244..821242 (-)	999	WP_015645821.1	hydrogenase expression/formation protein HypE	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42032.64 Da
• Isoelectric Point: 9.9924

>NTDB_id=58685 K747_RS04005 WP_015645817.1 815303..816439(+) (comB10) [Helicobacter pylori UM032]
MNKWLKGALVFVGGFATIIAISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEVNSSKEETFKSPLIDLKTNTTSPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=58685 K747_RS04005 WP_015645817.1 815303..816439(+) (comB10) [Helicobacter pylori UM032]
ATGAATAAATGGCTTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATTATAGCCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACTT
TCACTCAAAACCCACAGCCAACCAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAGTGAACTCTTCTAAAGAAGAAACTTTTAAGAGCCCTCTCATAGATTTAAAAAC
AAACACAACCTCTCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAATCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCGAGCATGGGCAAGGCTGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	95.503	100	0.955