Detailed information NTG0058684

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: K747_RS04000
• Genome accession: NC_021215
• Coordinates: 814315..815310 (+)
• Length: 331 a.a.
• NCBI ID: WP_015645816.1
• Uniprot ID: -
• Organism: Helicobacter pylori UM032
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 809315..820310

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K747_RS03970 (K747_04240)	panD	810722..811072 (+)	351	WP_015645812.1	aspartate 1-decarboxylase	-
K747_RS03975 (K747_04245)	-	811083..811376 (+)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
K747_RS03980 (K747_04250)	-	811376..812371 (+)	996	WP_015645813.1	PDZ domain-containing protein	-
K747_RS03985 (K747_04255)	comB6	812379..813434 (+)	1056	WP_015645814.1	P-type conjugative transfer protein TrbL	Machinery gene
K747_RS03990	comB7	813450..813575 (+)	126	WP_020849792.1	hypothetical protein	Machinery gene
K747_RS03995 (K747_04260)	comB8	813572..814315 (+)	744	WP_015645815.1	virB8 family protein	Machinery gene
K747_RS04000 (K747_04265)	comB9	814315..815310 (+)	996	WP_015645816.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
K747_RS04005 (K747_04270)	comB10	815303..816439 (+)	1137	WP_015645817.1	DNA type IV secretion system protein ComB10	Machinery gene
K747_RS04010 (K747_04275)	-	816505..817917 (+)	1413	WP_015645818.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
K747_RS04015 (K747_04280)	gmd	817932..819077 (+)	1146	WP_015645819.1	GDP-mannose 4,6-dehydratase	-
K747_RS04020 (K747_12760)	-	819070..820002 (+)	933	WP_015645820.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 331 a.a.
• Molecular weight: 37973.78 Da
• Isoelectric Point: 9.3712

>NTDB_id=58684 K747_RS04000 WP_015645816.1 814315..815310(+) (comB9) [Helicobacter pylori UM032]
MRKVLCALVGFLLAFSVLKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENALENTLENAPTNNKPLKEEPLKEGKEEAKEKEEETIIIGDNTNAMKIVKKDIQKGYRALKSSQRKW
YCLGICSKKSKLSLMPKEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYL
CIRFVKRGKDE

Nucleotide

• Length: 996 bp

>NTDB_id=58684 K747_RS04000 WP_015645816.1 814315..815310(+) (comB9) [Helicobacter pylori UM032]
ATGCGTAAGGTTTTATGCGCTCTTGTGGGTTTTTTGTTGGCTTTTAGCGTTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCCGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAATAAAGAAAATGCCCTTGAAAATACCCTTGAAAATGCCCCCACAAACAA
CAAGCCCTTAAAAGAAGAACCCTTAAAAGAAGGAAAAGAAGAAGCCAAAGAAAAAGAAGAAGAGACTATAATTATTGGCG
ATAACACTAATGCCATGAAAATCGTTAAAAAAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGG
TATTGTTTAGGGATTTGTTCTAAAAAATCCAAACTCTCTTTGATGCCTAAAGAAATTTTTAACGACAAACAATTCACCTA
TTTCAAATTTGACAAAAAATTAGCGCTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGA
ATACTAGGATTGTGGGCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGCTGGGCAAGGACTATTTG
TGTATCCGTTTTGTCAAAAGGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-322)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	93.656	100	0.937