Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   EVX74_RS02145 Genome accession   NZ_CP078045
Coordinates   490498..491025 (+) Length   175 a.a.
NCBI ID   WP_004732447.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain AL_065     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 485498..496025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EVX74_RS02130 (EVX74_002120) pilM 488082..489140 (+) 1059 WP_129717185.1 pilus assembly protein PilM Machinery gene
  EVX74_RS02135 (EVX74_002125) - 489140..489779 (+) 640 Protein_412 PilN domain-containing protein -
  EVX74_RS02140 (EVX74_002130) - 489776..490498 (+) 723 Protein_413 type 4a pilus biogenesis protein PilO -
  EVX74_RS02145 (EVX74_002135) pilP 490498..491025 (+) 528 WP_004732447.1 pilus assembly protein PilP Machinery gene
  EVX74_RS02150 (EVX74_002140) pilQ 491044..493209 (+) 2166 WP_004732444.1 type IV pilus secretin PilQ family protein Machinery gene
  EVX74_RS02155 (EVX74_002145) aroK 493246..493782 (+) 537 WP_004732442.1 shikimate kinase AroK -
  EVX74_RS02160 (EVX74_002150) aroB 493811..494890 (+) 1080 WP_004732440.1 3-dehydroquinate synthase -
  EVX74_RS02165 (EVX74_002155) - 494901..495779 (+) 879 WP_004732438.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19302.44 Da        Isoelectric Point: 7.1658

>NTDB_id=586500 EVX74_RS02145 WP_004732447.1 490498..491025(+) (pilP) [Acinetobacter lwoffii strain AL_065]
MKNIKITSALTLGFLLLGCDSRIDAVNQEMANIRNQPPLPIEPAPDFMPVETFNYAAHQIKSPFLPSSLAAELKIMAGKR
VYPNLSRQLQPLESYPLETLTMKGSMRNQAGQILALIQTPDGEVERIQRGSYMGLNHGRVVGITPTQIDLIEIIPDGREG
YVERPRSLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=586500 EVX74_RS02145 WP_004732447.1 490498..491025(+) (pilP) [Acinetobacter lwoffii strain AL_065]
ATGAAGAACATTAAAATTACTTCAGCTTTAACACTTGGGTTTTTATTGTTGGGATGCGATTCACGCATTGATGCAGTCAA
TCAGGAAATGGCTAATATTCGTAATCAGCCACCTTTGCCAATTGAACCGGCTCCTGATTTTATGCCAGTTGAAACCTTCA
ACTATGCAGCACATCAGATCAAAAGCCCTTTTTTACCAAGCTCTCTGGCTGCTGAACTGAAAATTATGGCGGGGAAACGG
GTTTATCCAAACCTATCACGTCAACTGCAACCGCTAGAAAGTTATCCGCTCGAAACATTGACCATGAAAGGCAGTATGCG
CAATCAGGCAGGACAAATTCTGGCTTTAATCCAGACGCCTGATGGTGAGGTTGAGCGGATTCAACGTGGTAGCTATATGG
GACTTAATCATGGTCGTGTGGTTGGAATTACACCAACACAAATCGATTTGATTGAGATTATTCCAGATGGCCGTGAGGGA
TATGTGGAACGTCCGCGAAGTCTGGTTCTCATTGGGCCGGCGCCATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

76.571

100

0.766
  comL Acinetobacter baylyi ADP1

72.781

96.571

0.703