Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   EGT68_RS06335 Genome accession   NZ_CP078042
Coordinates   1309602..1310309 (-) Length   235 a.a.
NCBI ID   WP_004915082.1    Uniprot ID   A0A8I0S549
Organism   Acinetobacter junii strain AJ_068     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1304602..1315309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT68_RS06310 (EGT68_006310) - 1305129..1306004 (+) 876 WP_042892507.1 class I SAM-dependent methyltransferase -
  EGT68_RS06315 (EGT68_006315) - 1306191..1306352 (+) 162 Protein_1224 LamB/YcsF family protein -
  EGT68_RS06320 (EGT68_006320) - 1306357..1306830 (+) 474 Protein_1225 biotin-dependent carboxyltransferase family protein -
  EGT68_RS06325 (EGT68_006325) - 1306831..1308564 (+) 1734 WP_125272637.1 biotin carboxylase N-terminal domain-containing protein -
  EGT68_RS06330 (EGT68_006330) - 1308617..1309396 (-) 780 WP_004915079.1 M48 family metallopeptidase -
  EGT68_RS06335 (EGT68_006335) crp 1309602..1310309 (-) 708 WP_004915082.1 cAMP-activated global transcriptional regulator CRP Regulator
  EGT68_RS06340 (EGT68_006340) - 1310457..1310885 (+) 429 WP_004953612.1 OsmC family protein -
  EGT68_RS06345 (EGT68_006345) - 1310931..1311731 (-) 801 Protein_1230 peptidoglycan DD-metalloendopeptidase family protein -
  EGT68_RS06350 (EGT68_006350) clpB 1311993..1314572 (+) 2580 WP_004915091.1 ATP-dependent chaperone ClpB -
  EGT68_RS06355 (EGT68_006355) - 1314737..1315159 (+) 423 WP_004915093.1 hypothetical protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26613.24 Da        Isoelectric Point: 4.7528

>NTDB_id=586470 EGT68_RS06335 WP_004915082.1 1309602..1310309(-) (crp) [Acinetobacter junii strain AJ_068]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEKNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDTSLEENAFTEEEFDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=586470 EGT68_RS06335 WP_004915082.1 1309602..1310309(-) (crp) [Acinetobacter junii strain AJ_068]
ATGACTTCAAATTTTTCACAGCTTAGCACTGATGCTTTATCACCAGGTCAATTACCTGAATCTGTTAAAGCCTTGCTAAA
ACGTGCTCATATTAACAGATACCCTAAACGCACCACGATTGTTGACGCTGGAACGGAATCAAAATCACTGTATTTAATAT
TAAAAGGTTCGGTGTCAATTATTTTACGTGAAGATGATGAACGTGAGATTGTCGTTGCATATTTAAACCCTGGGGATTTC
TTTGGCGAAATGGGTCTTTTTGAGAAGAACCCACAACGTACTGCGGAAGTAAGAACTCGTGATGTTTGTGAAATCGCTGA
GATTTCATATGACAACTTCCACGAATTAAGCAAACAATATCCTGATTTGAGCTACGCAGTATTTGCTCAATTAGTTCGCC
GCTTAAAAAATACAACACGTAAAGTAACTGACCTTGCATTTATTGATGTATCTGGTCGTATTGCACGTTGTTTAATTGAT
TTATCTTCGCAACCAGAAGCAATGATCTTACCAAATGGTCGTCAAATCCGTATTACTCGCCAAGAGATAGGTCGTATTGT
CGGTTGTTCACGTGAAATGGTTGGACGTGTTCTTAAGACGCTTGAAGATCAGGGCATGATTCAAACTGATGGTAAAGCAA
TTTTAATTTTTGATACATCATTAGAAGAAAATGCATTTACTGAAGAAGAGTTTGACGACGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

96.17

100

0.962
  crp Vibrio cholerae strain A1552

47.826

88.085

0.421
  crp Haemophilus influenzae Rd KW20

49.223

82.128

0.404