Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   EGK58_RS09560 Genome accession   NZ_CP078027
Coordinates   1989936..1990643 (-) Length   235 a.a.
NCBI ID   WP_004782527.1    Uniprot ID   A0AAU0NHI4
Organism   Acinetobacter variabilis strain AV_175     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1984936..1995643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGK58_RS09545 (EGK58_009545) clpB 1985350..1987929 (-) 2580 WP_125278430.1 ATP-dependent chaperone ClpB -
  EGK58_RS09550 (EGK58_009550) - 1988183..1988548 (-) 366 WP_125278429.1 MbcA/ParS/Xre antitoxin family protein -
  EGK58_RS09555 (EGK58_009555) - 1988693..1989742 (-) 1050 WP_125278428.1 NADP(H)-dependent aldo-keto reductase -
  EGK58_RS09560 (EGK58_009560) crp 1989936..1990643 (-) 708 WP_004782527.1 cAMP-activated global transcriptional regulator CRP Regulator
  EGK58_RS09565 (EGK58_009565) - 1990791..1991213 (+) 423 WP_004782528.1 OsmC family protein -
  EGK58_RS09570 (EGK58_009570) - 1991257..1992300 (-) 1044 WP_125278427.1 metallophosphoesterase -
  EGK58_RS09575 (EGK58_009575) - 1992549..1994786 (-) 2238 WP_034170011.1 NADP-dependent isocitrate dehydrogenase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26330.00 Da        Isoelectric Point: 4.6729

>NTDB_id=586422 EGK58_RS09560 WP_004782527.1 1989936..1990643(-) (crp) [Acinetobacter variabilis strain AV_175]
MTSNFSQLSTDALSPGQLPESVKALLKRAYINRYPKRTTIVDAGSESKSLYLILKGSVSIILREDDEREIVVAYLNAGDF
FGEMGLFEANPQRTAEVRTRDVCEIAEITYENFHEISKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEEPEAVGAGEFEDE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=586422 EGK58_RS09560 WP_004782527.1 1989936..1990643(-) (crp) [Acinetobacter variabilis strain AV_175]
ATGACTTCAAACTTTTCACAATTAAGCACAGACGCACTTTCGCCGGGGCAACTACCTGAATCAGTGAAGGCGTTATTAAA
ACGTGCATATATCAATCGCTATCCAAAACGTACCACGATCGTGGATGCAGGATCAGAATCTAAATCGCTGTATTTAATTC
TGAAGGGGTCTGTGTCTATCATTCTTCGTGAAGATGATGAACGTGAGATTGTGGTAGCTTATTTAAATGCGGGAGACTTC
TTTGGGGAAATGGGTCTTTTCGAAGCAAATCCACAGCGTACTGCAGAAGTGCGTACTCGTGATGTCTGTGAAATTGCTGA
AATTACCTATGAAAACTTTCATGAAATTAGCAAACAATATCCAGACCTTAGCTATGCAGTTTTTGCCCAGCTGGTTCGCC
GTCTGAAAAATACCACACGTAAAGTGACTGACCTGGCATTTATCGATGTGTCTGGTCGTATTGCACGTTGTCTGATTGAC
CTGTCATCTCAGCCAGAAGCGATGATCTTGCCAAATGGTCGTCAGATCCGTATTACCCGTCAGGAAATTGGCCGTATTGT
TGGGTGTTCACGTGAAATGGTCGGTCGTGTTCTAAAAACTCTAGAAGAACAGGGCATGATTGAAACCGATGGTAAGGCGA
TTCTGATTTTTGATGCATCGCTGGAAGAACCTGAAGCAGTGGGTGCTGGCGAGTTCGAAGACGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

95.067

94.894

0.902
  crp Vibrio cholerae strain A1552

46.829

87.234

0.409
  crp Haemophilus influenzae Rd KW20

47.692

82.979

0.396