Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   EGK58_RS01115 Genome accession   NZ_CP078027
Coordinates   268011..269150 (-) Length   379 a.a.
NCBI ID   WP_125279453.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain AV_175     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 263011..274150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGK58_RS01085 (EGK58_001085) - 263282..263887 (-) 606 WP_125279451.1 hypothetical protein -
  EGK58_RS01090 (EGK58_001090) - 264052..264429 (-) 378 WP_125279452.1 RcnB family protein -
  EGK58_RS01095 (EGK58_001095) - 264638..265182 (-) 545 Protein_217 glutathione peroxidase -
  EGK58_RS01100 (EGK58_001100) - 265357..265902 (-) 546 WP_034705678.1 glutathione peroxidase -
  EGK58_RS01105 (EGK58_001105) - 266094..267005 (+) 912 WP_034705680.1 DMT family transporter -
  EGK58_RS01110 (EGK58_001110) - 267401..267970 (-) 570 WP_034171542.1 L-threonylcarbamoyladenylate synthase -
  EGK58_RS01115 (EGK58_001115) dprA 268011..269150 (-) 1140 WP_125279453.1 DNA-processing protein DprA Machinery gene
  EGK58_RS01120 (EGK58_001120) - 269208..269417 (-) 210 Protein_222 peptidoglycan-binding protein LysM -
  EGK58_RS01125 (EGK58_001125) - 269561..270718 (-) 1158 WP_125279454.1 RNA-guided endonuclease InsQ/TnpB family protein -
  EGK58_RS01130 (EGK58_001130) - 270715..271329 (-) 615 WP_125279455.1 IS607 family transposase -
  EGK58_RS01135 (EGK58_001135) - 271378..271836 (-) 459 Protein_225 LysM peptidoglycan-binding domain-containing protein -
  EGK58_RS01140 (EGK58_001140) def 272165..272695 (+) 531 WP_125279456.1 peptide deformylase -
  EGK58_RS01145 (EGK58_001145) - 272787..273197 (+) 411 WP_005233427.1 DUF2946 family protein -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 42733.55 Da        Isoelectric Point: 6.8882

>NTDB_id=586399 EGK58_RS01115 WP_125279453.1 268011..269150(-) (dprA) [Acinetobacter variabilis strain AV_175]
MLNSLSRVQLETLTLWYLVQHSLSSFYKISQHYSSLTTAIQPDQVPTWQALGIHANHVQRLKDFSLPESQQKFQRCLEKV
QRDSDFVLLYHDLHYPQQLSHYVDKPPIIFGQGQPDTLLQAQIAVVGSRKPSPHGRQVAYDFSFYLSEQGFYINSGLAQG
IDEAAHRAGLKHQGTIAVMGTGLDQTYPSQHAQLRQEIIAHGGAVITEFLPETPPLQHHFPRRNRIVSGLSLGVIVAEAT
LKSGSLITAKLAAEQGKTVFAIPGHIYSEYHKGCHQLIREGAILIDHPQQVIEELALATQWQALQNEVQHDMADELPAHI
PPHLLRLYNQLDWVGQDLDHLSHHLQQYGSSLTSQLMELELLGFCTQQAGMYLRCRPHK

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=586399 EGK58_RS01115 WP_125279453.1 268011..269150(-) (dprA) [Acinetobacter variabilis strain AV_175]
ATGCTGAACTCTTTATCACGCGTGCAACTGGAAACACTGACGTTATGGTATCTGGTTCAGCATTCTCTTTCGAGCTTCTA
TAAAATCAGTCAGCATTATTCAAGTCTAACCACAGCCATACAGCCTGATCAGGTGCCTACCTGGCAGGCGCTTGGCATTC
ATGCCAATCATGTCCAACGCTTAAAAGACTTCTCTCTTCCAGAATCACAACAGAAATTTCAGCGCTGTCTGGAAAAAGTT
CAGCGAGATAGTGATTTTGTTCTACTCTACCATGATCTGCACTATCCGCAGCAACTCAGCCACTATGTAGACAAACCACC
GATTATTTTTGGCCAAGGTCAGCCGGATACCCTGCTACAAGCCCAAATTGCAGTTGTGGGAAGTCGCAAGCCGAGTCCTC
ATGGCCGGCAAGTAGCTTATGATTTTTCCTTTTATTTGAGTGAACAGGGTTTCTATATTAATAGTGGATTAGCACAAGGC
ATAGATGAAGCTGCTCATCGGGCAGGATTAAAACATCAGGGAACCATTGCGGTGATGGGAACCGGACTGGATCAGACCTA
CCCTTCTCAACATGCACAATTACGCCAGGAGATTATTGCGCATGGTGGTGCCGTCATTACCGAGTTTCTACCAGAAACCC
CACCGTTGCAACATCACTTTCCACGGCGTAACAGGATTGTCAGCGGTTTAAGTCTCGGGGTCATTGTGGCTGAAGCGACC
TTAAAAAGCGGCTCTCTGATTACGGCCAAACTAGCTGCCGAACAAGGCAAGACTGTATTTGCCATTCCGGGACATATTTA
TAGTGAATATCATAAGGGTTGCCATCAGCTGATTCGTGAAGGCGCGATTCTGATTGATCACCCGCAACAGGTGATTGAAG
AACTGGCTCTGGCGACTCAATGGCAAGCCTTACAAAATGAAGTACAACATGACATGGCGGATGAACTTCCTGCACACATA
CCGCCTCATCTGCTCAGACTTTATAACCAGCTGGACTGGGTCGGACAGGATCTGGATCATCTCAGTCATCATCTGCAACA
GTATGGGTCTTCTCTGACCAGTCAATTGATGGAACTGGAGCTACTTGGCTTTTGTACCCAGCAAGCTGGTATGTATCTAC
GTTGTCGTCCACATAAATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(86-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

63.298

99.208

0.628
  dprA Acinetobacter baumannii D1279779

62.5

99.208

0.62
  dprA Acinetobacter baylyi ADP1

59.737

100

0.599