Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   EGT69_RS01685 Genome accession   NZ_CP078018
Coordinates   366503..367933 (-) Length   476 a.a.
NCBI ID   WP_125297254.1    Uniprot ID   -
Organism   Acinetobacter junii strain AJ_351     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 361503..372933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT69_RS01670 (EGT69_001670) lptG 362546..363616 (+) 1071 WP_017397484.1 LPS export ABC transporter permease LptG -
  EGT69_RS01675 (EGT69_001675) gpmI 363736..365280 (+) 1545 WP_004958494.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  EGT69_RS01680 (EGT69_001680) - 365290..366465 (+) 1176 WP_005403527.1 S41 family peptidase -
  EGT69_RS01685 (EGT69_001685) pilR 366503..367933 (-) 1431 WP_125297254.1 sigma-54-dependent transcriptional regulator Regulator
  EGT69_RS01690 (EGT69_001690) pilS 367956..369521 (-) 1566 WP_112987268.1 sensor histidine kinase Regulator
  EGT69_RS01695 (EGT69_001695) - 369537..370172 (-) 636 WP_004957336.1 response regulator transcription factor GacA -
  EGT69_RS01700 (EGT69_001700) pbpG 370384..371445 (+) 1062 WP_125297253.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  EGT69_RS01705 (EGT69_001705) - 371609..372223 (+) 615 WP_004957343.1 DUF6915 family protein -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 53516.50 Da        Isoelectric Point: 6.1504

>NTDB_id=586361 EGT69_RS01685 WP_125297254.1 366503..367933(-) (pilR) [Acinetobacter junii strain AJ_351]
MATKQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKKFFTEFQYDACLTDLNLPDGNGLDLVKHVTQNYPNTPI
AVLTAYGNMDIAIAALKVGAFDFVSKPVNQTHLDQLIQKALNRPQPEQEAVETALENKLLIGRSAPIQQLRITLKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLELLVQQGRFRQDLFFRIHVMDIVLPPLRERGQDILI
LANHFIQKISQEWELPVKSLTTRAEQFLLQQYFPGNVRELRNIIERAITLSDDETIDLAHLQTAPLRSSISIPSNAYVQS
DESEITLQSASPNPSSKKLPPEGLERYLENIEKEVLLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEDDE

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=586361 EGT69_RS01685 WP_125297254.1 366503..367933(-) (pilR) [Acinetobacter junii strain AJ_351]
ATGGCAACTAAACAACCTCTCGTCTTACTCGTAGACGATGAAGAAGACTTGTGTCTTCTTATGCAAATGACGCTCGCACG
TATGGGAATCAAAACTCATCTTGCATATCGTGTGGAGCAAGCCAAAAAATTCTTTACCGAGTTTCAGTACGATGCATGTC
TAACCGATCTTAACCTTCCAGATGGAAATGGTCTTGATCTTGTCAAACATGTGACTCAAAACTATCCAAACACACCCATC
GCTGTTCTTACTGCTTACGGAAATATGGACATTGCAATTGCAGCACTGAAAGTTGGGGCGTTTGACTTTGTTAGCAAACC
AGTGAATCAGACACATCTTGATCAACTGATTCAAAAAGCTTTAAACCGCCCTCAACCCGAACAAGAGGCGGTAGAAACAG
CCTTAGAAAACAAATTGCTGATTGGGCGTTCAGCACCTATTCAACAATTACGGATCACTTTAAAAAAGATTGCCCGTTCA
CAAGCACCTGTTTTTATCACAGGTGAATCAGGAACAGGAAAAGAAGTTGTTGCGAACTTAGTTCATCGTTTAAGTAATCG
CAGCGAAGGACCTTTCATTGCCATCAACTGTGGTGCTATTCCAACAGAATTAATGGAAAGCGAATTATTCGGTCATAAGA
AAGGCAGCTTTACAGGTGCAACACAAGATAAACAAGGTCTTATCTTATCGGCACACGGCGGCAGCCTTTTTTTAGATGAA
ATCGCAGAACTTCCCTTAAATATGCAAGTAAAACTTTTACGTGCAGTACAAGAGAAAAAAATTCGTCCAGTTGGATCAGA
TCAAGAAATTGATGTGGATTTCCGTGTGATTAGTGCCAGCCACCAAGATTTAGAACTCTTGGTTCAGCAAGGTCGCTTTA
GGCAAGATTTATTCTTCCGCATTCATGTGATGGATATCGTATTGCCCCCACTTCGTGAGCGTGGTCAAGATATCTTAATT
CTGGCAAATCATTTTATTCAAAAGATTAGCCAAGAATGGGAGTTACCTGTTAAATCCCTCACCACACGTGCAGAGCAATT
CCTCTTGCAGCAATATTTTCCAGGTAACGTTCGCGAACTTCGAAATATTATTGAACGTGCGATCACTCTCAGTGATGATG
AAACCATTGATTTGGCTCATCTGCAAACCGCACCTCTGCGTAGCTCAATCAGTATTCCTTCAAATGCTTATGTTCAGTCA
GATGAAAGTGAAATAACGCTGCAAAGTGCGAGTCCAAACCCAAGCTCTAAAAAATTACCGCCAGAAGGTTTGGAGCGCTA
TTTAGAAAATATTGAAAAAGAAGTATTATTGAATGCTTTAAATCTGACCCACTGGAATCGAACGCTAGCAGCAAAAAAAC
TTGGAATGACCTTCCGATCTTTACGCTATCGTTTGAAAAAGTTTGGTTTAGATACTGAGGATGATGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(428-468)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

83.613

100

0.836
  pilR Pseudomonas aeruginosa PAK

50

97.479

0.487