Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   M1E50_RS01880 Genome accession   NZ_CP096274
Coordinates   347321..347923 (+) Length   200 a.a.
NCBI ID   WP_000271551.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FJ0322     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 342321..352923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1E50_RS01845 (M1E50_01840) mreC 342389..343231 (+) 843 WP_000911036.1 rod shape-determining protein MreC -
  M1E50_RS01850 (M1E50_01845) mreD 343231..343761 (+) 531 WP_001259925.1 rod shape-determining protein MreD -
  M1E50_RS01855 (M1E50_01850) rplU 343997..344305 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  M1E50_RS01860 (M1E50_01855) - 344311..344631 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  M1E50_RS01865 (M1E50_01860) rpmA 344643..344927 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  M1E50_RS01870 (M1E50_01865) obgE 345547..346839 (+) 1293 WP_000496100.1 GTPase ObgE -
  M1E50_RS01875 (M1E50_01870) - 346852..347307 (+) 456 WP_000368902.1 ACT domain-containing protein -
  M1E50_RS01880 (M1E50_01875) ruvA 347321..347923 (+) 603 WP_000271551.1 Holliday junction branch migration protein RuvA Machinery gene
  M1E50_RS01885 (M1E50_01880) ruvB 347955..348959 (+) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  M1E50_RS01890 (M1E50_01885) queA 348961..349986 (+) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  M1E50_RS01895 (M1E50_01890) tgt 350009..351148 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  M1E50_RS01900 (M1E50_01895) yajC 351167..351427 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22253.45 Da        Isoelectric Point: 5.7132

>NTDB_id=586302 M1E50_RS01880 WP_000271551.1 347321..347923(+) (ruvA) [Staphylococcus aureus strain FJ0322]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKQLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=586302 M1E50_RS01880 WP_000271551.1 347321..347923(+) (ruvA) [Staphylococcus aureus strain FJ0322]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCAACTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(156-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.734

99.5

0.465
  ruvA Streptococcus pneumoniae R6

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae D39

46.231

99.5

0.46
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425