Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   KUA23_RS17860 Genome accession   NZ_CP078013
Coordinates   3958287..3960512 (-) Length   741 a.a.
NCBI ID   WP_252992542.1    Uniprot ID   -
Organism   Pseudomonas pergaminensis strain 1008     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3953287..3965512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KUA23_RS17825 (KUA23_17760) murB 3953682..3954701 (-) 1020 WP_078048998.1 UDP-N-acetylmuramate dehydrogenase -
  KUA23_RS17830 (KUA23_17765) - 3954698..3955162 (-) 465 WP_025858159.1 low molecular weight protein-tyrosine-phosphatase -
  KUA23_RS17835 (KUA23_17770) kdsB 3955162..3955926 (-) 765 WP_099491806.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KUA23_RS17840 (KUA23_17775) - 3955923..3956108 (-) 186 WP_003174668.1 Trm112 family protein -
  KUA23_RS17845 (KUA23_17780) lpxK 3956133..3957143 (-) 1011 WP_252992541.1 tetraacyldisaccharide 4'-kinase -
  KUA23_RS17850 (KUA23_17785) - 3957143..3957571 (-) 429 WP_078049001.1 biopolymer transporter ExbD -
  KUA23_RS17855 (KUA23_17790) exbB 3957568..3958203 (-) 636 WP_012724911.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KUA23_RS17860 (KUA23_17795) comA 3958287..3960512 (-) 2226 WP_252992542.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KUA23_RS17865 (KUA23_17800) - 3960648..3961163 (+) 516 WP_012724913.1 DUF2062 domain-containing protein -
  KUA23_RS17870 (KUA23_17805) - 3961160..3962530 (-) 1371 WP_252992543.1 sensor histidine kinase -
  KUA23_RS17875 (KUA23_17810) - 3962517..3963245 (-) 729 WP_346356345.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80552.62 Da        Isoelectric Point: 11.1182

>NTDB_id=586290 KUA23_RS17860 WP_252992542.1 3958287..3960512(-) (comA) [Pseudomonas pergaminensis strain 1008]
MRTGMFAFALGLLALRFLPALPATGWLIALLVLALMLLPFRTYPLAFFLVGLSWACISAQWALDDRLRPALDGQTRWVEG
WVTGLPQQTGEGVRFVLTDSRSRNARLPTRIRVSWRGGPSVRSGERWRLAVTLKRPAGLLNFHGFDQEAWLLAQRIGATG
TVKDGERLAPARNAWRDSVRQRLMAVDAQGREAGLIALVLGDGSGLAAADWQVLQDTGTVHLLVISGQHIGLLAGLIYAL
IAGLARYGCWPRSWPWLPWACGLAFGAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGLWWPLLLALNGVLVLEPL
ASLQPGFWLSFAAVAVLILAFGGRLGPWRVWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPFANLVAVPWISLVVLPLAL
LGTALLPLPFVGEGLLWLAGGALDGLFKGLGWLAGQVPAWIPADVPLGYWLVSLLGAVLLLLPKGVPFRVLGWPMLLLAV
FPPREWVPHGQVDVVQLDVGQGQSLILRTRHHTLLYDAGPRSGTFDLGARVVLPSLRKLGVGALDLMLLSHADADHAGGA
AAIAKGLPIKRVVGGETDGLPAFLGTQPCISGERWTWDGVTFELWQWPDAIAGNPKSCVLRVQANGERLLLTGDIDRAAE
QAMLASPLAVPTDWLQAPHHGSRSSSSWAFLERLAPRSVLISRGRSNAFGHPHPQVMARYQRLGSQVYDSAEQGAVRLQL
GAFAPPVVARSQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=586290 KUA23_RS17860 WP_252992542.1 3958287..3960512(-) (comA) [Pseudomonas pergaminensis strain 1008]
ATGAGGACAGGGATGTTCGCGTTTGCGCTGGGGCTGCTGGCGCTGCGTTTTTTACCCGCGTTGCCCGCTACCGGCTGGCT
GATCGCCTTGCTGGTGCTGGCATTGATGCTGTTGCCGTTTCGCACTTACCCCTTGGCGTTTTTCTTGGTGGGGCTGAGCT
GGGCCTGCATCAGCGCACAGTGGGCGCTGGATGATCGCCTACGGCCAGCATTGGACGGCCAGACACGCTGGGTGGAAGGG
TGGGTGACCGGGTTGCCGCAACAGACGGGCGAGGGCGTGCGTTTCGTGCTGACCGACAGTCGGTCGCGTAATGCCCGCTT
GCCCACACGCATTCGCGTCTCCTGGCGTGGCGGGCCGTCGGTGCGCAGTGGCGAGCGCTGGCGCTTGGCGGTCACCCTCA
AGCGACCAGCCGGGCTATTGAATTTCCACGGCTTTGATCAGGAGGCCTGGCTGCTGGCCCAGCGTATCGGTGCCACCGGC
ACGGTAAAGGACGGCGAGCGCTTGGCACCCGCACGCAATGCCTGGCGCGACAGTGTGCGCCAGCGCCTGATGGCGGTGGA
TGCCCAGGGCCGGGAGGCGGGCCTGATTGCGCTGGTACTGGGTGATGGCTCTGGATTGGCCGCCGCCGATTGGCAGGTCT
TGCAGGACACGGGCACTGTGCACCTGCTGGTCATCTCCGGCCAACACATCGGTTTGCTGGCGGGCTTGATCTACGCATTG
ATCGCCGGGTTGGCGCGCTACGGCTGCTGGCCCCGCAGCTGGCCTTGGTTGCCTTGGGCGTGTGGCCTGGCGTTCGGCGC
CGCGCTGGGGTATGGCTTGCTGGCAGGCTTTGGCGTGCCGGTGCAGCGCGCCTGCGTGATGGTGGGGTTGGTGTTGTTGT
GGCGGTTGCGATTCCGGCATCTCGGACTGTGGTGGCCTTTGCTGCTGGCACTCAATGGGGTGCTGGTCCTGGAGCCGTTG
GCGAGCCTGCAACCCGGTTTCTGGCTGTCGTTTGCGGCGGTGGCGGTGTTGATCCTGGCGTTCGGTGGGCGGCTGGGCCC
CTGGCGCGTGTGGCAGGCGTGGACCCGGCCGCAATGGCTGATTGCTATTGGGTTGTTCCCGGTGCTGCTGGTGTTGGGGC
TGCCCATCAGCCTGAGTGCACCGTTCGCCAACCTAGTGGCGGTGCCGTGGATCAGCCTGGTGGTACTGCCGCTGGCGTTG
CTCGGGACGGCGTTGCTGCCGCTGCCGTTTGTGGGTGAAGGCTTGCTGTGGCTGGCGGGCGGCGCACTGGATGGGTTATT
CAAGGGCTTGGGCTGGTTGGCCGGGCAGGTGCCGGCGTGGATTCCGGCCGATGTGCCGTTGGGCTATTGGCTGGTGAGTC
TGCTCGGCGCCGTGCTGCTCCTGCTGCCCAAGGGCGTGCCGTTTCGTGTGCTGGGCTGGCCGATGCTGTTGCTGGCGGTG
TTTCCACCACGTGAATGGGTGCCCCATGGGCAGGTCGACGTGGTGCAGTTGGACGTCGGGCAGGGGCAGTCGCTGATCTT
GCGCACCCGGCACCATACCTTGCTGTATGACGCTGGCCCGCGCTCCGGAACCTTTGACCTCGGCGCGCGGGTGGTGCTGC
CATCGCTGCGAAAACTGGGGGTAGGGGCGTTGGACCTGATGCTGCTCAGCCATGCCGACGCAGATCATGCCGGCGGTGCG
GCGGCGATTGCCAAGGGCCTGCCGATCAAGCGCGTGGTGGGTGGAGAAACCGACGGGCTGCCGGCCTTTCTCGGCACTCA
GCCGTGTATCAGTGGCGAGCGCTGGACCTGGGACGGTGTGACCTTCGAACTCTGGCAGTGGCCTGATGCTATTGCCGGCA
ACCCGAAGTCCTGTGTGTTGCGGGTGCAGGCCAATGGCGAGCGTCTGTTGCTGACCGGCGACATCGACCGCGCCGCCGAA
CAGGCCATGCTCGCCTCACCCCTGGCGGTGCCGACCGATTGGTTGCAAGCGCCGCACCATGGCAGTCGCAGCTCTTCGTC
CTGGGCGTTTCTGGAGCGCCTCGCGCCGCGTTCCGTGCTTATTTCGCGGGGGCGTAGCAATGCGTTCGGCCATCCCCATC
CTCAGGTGATGGCGCGTTACCAGCGGCTGGGTAGCCAGGTGTATGACAGCGCCGAGCAGGGGGCGGTGCGCCTGCAATTG
GGCGCTTTCGCGCCACCGGTTGTTGCGCGTAGTCAACGCAGGTTCTGGCGCGAGCGGCTACCTTAG

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-671)

Competence protein (Competence)

(198-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.833

97.166

0.591
  comA Ralstonia pseudosolanacearum GMI1000

35.597

100

0.382