Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KUA23_RS17855 Genome accession   NZ_CP078013
Coordinates   3957568..3958203 (-) Length   211 a.a.
NCBI ID   WP_012724911.1    Uniprot ID   A0A855QI08
Organism   Pseudomonas pergaminensis strain 1008     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3952568..3963203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KUA23_RS17820 (KUA23_17755) - 3952934..3953605 (+) 672 WP_078048997.1 Bax inhibitor-1/YccA family protein -
  KUA23_RS17825 (KUA23_17760) murB 3953682..3954701 (-) 1020 WP_078048998.1 UDP-N-acetylmuramate dehydrogenase -
  KUA23_RS17830 (KUA23_17765) - 3954698..3955162 (-) 465 WP_025858159.1 low molecular weight protein-tyrosine-phosphatase -
  KUA23_RS17835 (KUA23_17770) kdsB 3955162..3955926 (-) 765 WP_099491806.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KUA23_RS17840 (KUA23_17775) - 3955923..3956108 (-) 186 WP_003174668.1 Trm112 family protein -
  KUA23_RS17845 (KUA23_17780) lpxK 3956133..3957143 (-) 1011 WP_252992541.1 tetraacyldisaccharide 4'-kinase -
  KUA23_RS17850 (KUA23_17785) - 3957143..3957571 (-) 429 WP_078049001.1 biopolymer transporter ExbD -
  KUA23_RS17855 (KUA23_17790) exbB 3957568..3958203 (-) 636 WP_012724911.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KUA23_RS17860 (KUA23_17795) comA 3958287..3960512 (-) 2226 WP_252992542.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KUA23_RS17865 (KUA23_17800) - 3960648..3961163 (+) 516 WP_012724913.1 DUF2062 domain-containing protein -
  KUA23_RS17870 (KUA23_17805) - 3961160..3962530 (-) 1371 WP_252992543.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22875.02 Da        Isoelectric Point: 7.3613

>NTDB_id=586289 KUA23_RS17855 WP_012724911.1 3957568..3958203(-) (exbB) [Pseudomonas pergaminensis strain 1008]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWSWIKNKQLDKDKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=586289 KUA23_RS17855 WP_012724911.1 3957568..3958203(-) (exbB) [Pseudomonas pergaminensis strain 1008]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGTTCTATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGTGCCAGTCGCGTTACCCCCGAGCATCTGCTGGGGCAGGTCTGGAGCTGGATCAAGAACA
AGCAGTTGGACAAGGACAAACTCAAGGAACTGCGCGCCAACTCCCCGTTGGGTGAAATCCTTGCTGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAGGCTGCCGCCCGCGTCATCCATGAACTGGAGCGCTACAT
CAATGCCCTCGGCACCATCGCCGCCATGGCGCCATTGCTTGGCTTGCTGGGTACCGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCCGGCATGACCACCAACGCGGCCGTGCTGGCCGGGGGTATTTCCAAGGCGCTGATCACCACGGCG
GCGGGCTTGATGGTGGGTATCCCTTCGGTGTTCTTTCACCGTTTCCTGCAACGTCGCATTGATGAGCTGGTGGTCGGTAT
GGAACAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAAGGCGACCGTGACGTCGACCTGGTTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A855QI08

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848