Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KV238_RS05120 Genome accession   NZ_CP078012
Coordinates   1034069..1034557 (+) Length   162 a.a.
NCBI ID   WP_165627027.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ_18-036     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1035150..1036492 1034069..1034557 flank 593


Gene organization within MGE regions


Location: 1034069..1036492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KV238_RS05120 (KV238_05120) ssbA 1034069..1034557 (+) 489 WP_165627027.1 single-stranded DNA-binding protein Machinery gene
  KV238_RS05125 (KV238_05125) rpsR 1034716..1034955 (+) 240 WP_002983142.1 30S ribosomal protein S18 -
  KV238_RS05130 (KV238_05130) - 1035150..1036492 (+) 1343 WP_230923926.1 IS3 family transposase -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17823.68 Da        Isoelectric Point: 4.9008

>NTDB_id=586260 KV238_RS05120 WP_165627027.1 1034069..1034557(+) (ssbA) [Streptococcus equi subsp. zooepidemicus strain SEZ_18-036]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRAFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
SYENQQGQRVYVTEVVADNFQMLESRATREANSSGSYGGGFNSSPATNSYSVPAQQTPNFGRDESPFGGSNPMDISDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=586260 KV238_RS05120 WP_165627027.1 1034069..1034557(+) (ssbA) [Streptococcus equi subsp. zooepidemicus strain SEZ_18-036]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGACGCAGAGCTTCGATACACTCCAAGTCAGGTGGCAGTTGC
TACGTTTACACTTGCTGTTAATCGCGCCTTTAAGAGCCAAAATGGTGAGCGCGAAGCGGATTTCATTAACTGTGTGATCT
GGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAAAAAGGGTGCCTTGATTGGGATTACGGGACGTATTCAGACTCGT
AGCTACGAAAACCAACAGGGGCAGCGTGTGTATGTAACCGAGGTTGTTGCAGATAATTTCCAAATGCTGGAAAGTCGTGC
TACACGTGAGGCGAACTCGTCTGGCTCATATGGTGGTGGTTTTAATAGCTCACCGGCAACCAATAGCTATTCAGTGCCTG
CTCAGCAAACACCTAACTTTGGCAGAGATGAAAGTCCATTTGGCGGCTCAAACCCAATGGATATTTCAGATGACGATCTT
CCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.471

100

0.617
  ssb Latilactobacillus sakei subsp. sakei 23K

57.31

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.856

68.519

0.383