Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   KV238_RS01835 Genome accession   NZ_CP078012
Coordinates   361185..362684 (-) Length   499 a.a.
NCBI ID   WP_014623463.1    Uniprot ID   A0A380JT11
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ_18-036     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 356185..367684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KV238_RS01815 (KV238_01810) - 356703..357866 (+) 1164 WP_230923738.1 IS30-like element ISSeq6 family transposase -
  KV238_RS01820 (KV238_01815) amiF 358264..359187 (-) 924 WP_206156575.1 ATP-binding cassette domain-containing protein Regulator
  KV238_RS01825 (KV238_01820) amiE 359180..360250 (-) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  KV238_RS01830 (KV238_01825) amiD 360259..361185 (-) 927 WP_042671297.1 oligopeptide ABC transporter permease OppC Regulator
  KV238_RS01835 (KV238_01830) amiC 361185..362684 (-) 1500 WP_014623463.1 ABC transporter permease Regulator
  KV238_RS01840 (KV238_01835) amiA3 362748..364724 (-) 1977 WP_043026548.1 peptide ABC transporter substrate-binding protein Regulator
  KV238_RS01845 (KV238_01840) pbp3 365032..366270 (+) 1239 WP_230923739.1 D-alanyl-D-alanine carboxypeptidase PBP3 -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 55634.10 Da        Isoelectric Point: 10.1102

>NTDB_id=586237 KV238_RS01835 WP_014623463.1 361185..362684(-) (amiC) [Streptococcus equi subsp. zooepidemicus strain SEZ_18-036]
MKKYIFERILRSLVSILLVTALTYTIVFTLVPKSLIFKQDPNYNKMVTTPDKKTNYLNTVFENMGYISYYSSKELQNKAS
KLDPAVTTAPTKANEKIYQKYIASIGNGWKLGRFTESKGFYAVREIPIYERVWNFFSHLVVIDHPWKIKDPKNPNLERYV
RPEIDPAVGPALVGSGTKHKYLIYFNKQFPFIHQNIITFDLGVSYPTYANIPVVQVITQGQGRTLQKEVTFPTGKTKLSS
IDIYSRTYKTPSSLDSKDIANFGKGDAYTNTQNNYAEPSMIANSFKIGIVGVLLSYLFGLPIGMLMAYYKNGWFDRFSTA
ATTFMLALPSIALIYIVRFVGSYLGLPDTFPLLGAGDVRSYVLPALILGILGTPSTVVWFRRYIVDLQGSDFVRFARAKG
LSEFEISKNHLFKQAMVPIVNGIPQAIVGTIAGATLTETVFAFPGMGKMLIDSIKAANNSMVVGLVFIFAVLSILALLVG
DILMTILDPRIKLSGKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=586237 KV238_RS01835 WP_014623463.1 361185..362684(-) (amiC) [Streptococcus equi subsp. zooepidemicus strain SEZ_18-036]
ATGAAAAAATACATATTTGAACGCATATTAAGGTCGCTTGTTTCAATCCTGCTGGTAACCGCACTAACCTATACCATTGT
TTTTACCTTAGTGCCAAAAAGCTTGATTTTTAAGCAAGACCCTAATTACAATAAGATGGTGACAACACCTGATAAGAAAA
CCAATTATCTAAATACTGTTTTTGAAAATATGGGCTATATTTCCTATTACAGCAGTAAAGAACTGCAGAATAAGGCTTCA
AAGCTTGATCCTGCTGTAACAACTGCACCAACCAAGGCCAATGAAAAAATATATCAAAAATATATTGCTTCTATCGGTAA
TGGTTGGAAGCTTGGGCGCTTTACAGAAAGTAAGGGATTTTATGCGGTTAGAGAGATTCCAATCTATGAGCGCGTGTGGA
ATTTCTTTAGCCATTTGGTTGTCATTGATCACCCATGGAAAATCAAGGATCCAAAAAATCCAAATCTAGAGCGTTATGTG
CGACCAGAAATTGACCCTGCTGTTGGTCCGGCCTTAGTTGGCTCTGGTACTAAGCACAAATACTTGATTTACTTCAACAA
GCAATTTCCATTTATCCATCAAAATATCATAACCTTTGATTTGGGAGTGTCCTATCCAACCTATGCCAACATTCCGGTTG
TTCAGGTTATCACTCAAGGACAAGGAAGAACACTTCAAAAAGAGGTCACCTTCCCAACAGGCAAAACAAAGCTGTCTTCA
ATCGATATTTACTCTCGAACCTATAAAACTCCAAGCTCTTTAGATAGCAAGGATATTGCCAATTTTGGTAAGGGTGATGC
TTATACTAATACACAAAATAACTATGCAGAACCATCTATGATTGCAAATTCCTTTAAGATTGGTATTGTCGGTGTCTTGC
TGTCCTATCTTTTTGGTCTGCCAATTGGTATGCTGATGGCTTATTATAAGAATGGCTGGTTTGACCGCTTTTCAACGGCT
GCCACAACCTTTATGTTAGCCCTGCCAAGCATTGCGCTTATCTATATTGTTCGATTTGTCGGCTCTTATTTGGGCTTGCC
AGATACCTTTCCGCTACTAGGAGCAGGAGATGTTAGGTCTTATGTGCTACCTGCTCTTATATTAGGAATTCTTGGTACAC
CAAGTACAGTAGTTTGGTTCCGGCGCTATATTGTGGACCTGCAAGGCAGTGATTTTGTTCGCTTTGCACGAGCAAAGGGG
CTTTCAGAATTCGAGATTTCAAAAAATCACCTCTTTAAGCAGGCTATGGTGCCTATTGTTAACGGTATTCCACAGGCCAT
TGTCGGAACAATTGCCGGTGCAACCTTGACAGAGACGGTGTTTGCTTTCCCAGGAATGGGTAAAATGCTGATTGATTCCA
TAAAAGCTGCTAATAACTCTATGGTTGTTGGTCTTGTCTTTATTTTTGCTGTTTTATCAATATTAGCCTTGCTAGTAGGT
GATATTCTTATGACGATTTTAGATCCACGTATTAAATTATCAGGTAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380JT11

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

62.124

100

0.621
  amiC Streptococcus thermophilus LMG 18311

62.124

100

0.621
  amiC Streptococcus thermophilus LMD-9

61.924

100

0.619