Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   KV238_RS01830 Genome accession   NZ_CP078012
Coordinates   360259..361185 (-) Length   308 a.a.
NCBI ID   WP_042671297.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ_18-036     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 355259..366185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KV238_RS01815 (KV238_01810) - 356703..357866 (+) 1164 WP_230923738.1 IS30-like element ISSeq6 family transposase -
  KV238_RS01820 (KV238_01815) amiF 358264..359187 (-) 924 WP_206156575.1 ATP-binding cassette domain-containing protein Regulator
  KV238_RS01825 (KV238_01820) amiE 359180..360250 (-) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  KV238_RS01830 (KV238_01825) amiD 360259..361185 (-) 927 WP_042671297.1 oligopeptide ABC transporter permease OppC Regulator
  KV238_RS01835 (KV238_01830) amiC 361185..362684 (-) 1500 WP_014623463.1 ABC transporter permease Regulator
  KV238_RS01840 (KV238_01835) amiA3 362748..364724 (-) 1977 WP_043026548.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34546.44 Da        Isoelectric Point: 7.1547

>NTDB_id=586236 KV238_RS01830 WP_042671297.1 360259..361185(-) (amiD) [Streptococcus equi subsp. zooepidemicus strain SEZ_18-036]
MAAIDKNKFTFVELDSYASEVIDAPAYSYWKSVFRQFFSRKSTILMLVILIAIILMSFIYPMFANYDFGDVSNINDFSKR
YIAPNAEYWFGTDQNGQSLFDGVWYGARNSILISVIATIINMIIGVVVGGIWGVSKAVDKVMIEVYNIISNLPQMLIIIV
LTYSIGAGFWNLIFAFCVTGWIGIAYSIRVQILRYRDLEYNLASQTLGTPTHKIVIKNLLPQLVSVIVSMVSLLLPSYIS
SEAFLSFFGLGLPITEPSLGRLISNYSNNLTTNAYLFWIPLTTLILVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=586236 KV238_RS01830 WP_042671297.1 360259..361185(-) (amiD) [Streptococcus equi subsp. zooepidemicus strain SEZ_18-036]
ATGGCAGCAATTGACAAAAATAAATTCACCTTTGTTGAATTAGATAGCTATGCATCAGAAGTCATTGATGCCCCTGCTTA
CTCTTATTGGAAATCTGTATTTAGACAATTTTTCTCACGTAAATCAACTATTTTGATGCTGGTTATTTTGATTGCTATTA
TTTTGATGAGCTTCATCTACCCTATGTTTGCCAACTATGACTTTGGTGACGTGAGCAATATTAATGATTTTTCAAAACGT
TATATAGCACCTAATGCAGAGTATTGGTTTGGTACGGATCAAAATGGTCAATCGCTCTTTGATGGTGTTTGGTATGGTGC
TAGAAATTCAATATTGATTTCGGTTATTGCAACAATCATCAACATGATTATCGGAGTTGTTGTCGGTGGTATTTGGGGTG
TTTCCAAAGCAGTTGATAAGGTAATGATTGAGGTGTATAATATCATCTCTAACCTGCCGCAAATGCTCATTATCATTGTG
TTGACTTATTCTATCGGAGCAGGCTTTTGGAACTTGATTTTTGCTTTTTGTGTGACAGGCTGGATTGGGATTGCTTATTC
GATTCGTGTGCAAATTTTGCGTTATCGTGATTTAGAATACAATTTAGCAAGTCAGACCTTAGGAACACCCACCCATAAAA
TTGTCATTAAAAATCTTTTGCCTCAATTGGTTTCGGTGATCGTTTCGATGGTTTCCTTGCTGTTGCCGTCCTACATTTCA
TCAGAGGCCTTCTTATCCTTCTTTGGCTTGGGATTACCAATCACAGAACCAAGCTTGGGTCGATTGATTTCAAATTATTC
AAACAATTTAACAACAAATGCCTATTTATTCTGGATTCCATTGACAACTCTTATTCTTGTTTCCTTACCTTTATACATTG
TAGGACAAAACTTAGCAGATGCTAGTGATCCAAGGACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

75.649

100

0.756
  amiD Streptococcus thermophilus LMG 18311

74.675

100

0.747
  amiD Streptococcus thermophilus LMD-9

74.675

100

0.747