Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   MZN67_RS00360 Genome accession   NZ_CP096116
Coordinates   74871..76862 (+) Length   663 a.a.
NCBI ID   WP_161504339.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain DFS-2111020037     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 69871..81862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZN67_RS00345 (MZN67_00340) - 70224..73313 (+) 3090 WP_374152124.1 reverse transcriptase domain-containing protein -
  MZN67_RS00355 (MZN67_00350) - 73646..74824 (-) 1179 WP_011214361.1 pyridoxal phosphate-dependent aminotransferase -
  MZN67_RS00360 (MZN67_00355) uvrB 74871..76862 (+) 1992 WP_161504339.1 excinuclease ABC subunit UvrB Machinery gene
  MZN67_RS00370 (MZN67_00365) - 77216..78829 (+) 1614 WP_161516826.1 bifunctional diguanylate cyclase/phosphodiesterase -
  MZN67_RS00375 (MZN67_00370) - 78921..80492 (-) 1572 WP_061692298.1 FMN-binding glutamate synthase family protein -
  MZN67_RS00380 (MZN67_00375) - 80570..80884 (-) 315 WP_011214365.1 cell division protein ZapA -
  MZN67_RS00385 (MZN67_00380) - 81040..81621 (+) 582 WP_062724956.1 UPF0149 family protein -

Sequence

Protein


Download         Length: 663 a.a.        Molecular weight: 75638.47 Da        Isoelectric Point: 5.2011

>NTDB_id=585953 MZN67_RS00360 WP_161504339.1 74871..76862(+) (uvrB) [Legionella pneumophila subsp. pneumophila strain DFS-2111020037]
MKDLFKIYSNYQPAGDQPTAIASLIDGLESGLAKQTLLGVTGSGKTFTIAHVIQAMKRPTLIMAPNKTLAAQLYGEFKAF
FPDNAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEHIEQMRLSATKALIERKDAIIVATVSAIYGLGDPDSYLRMLLH
LSRGEQSDQRKILKRLAEMQYTRTNLSLERGQFRVNGDVIDIFPADSEKEAIRIELFDDEVDNIARFDPLTGEILQRLPR
VTIFPKTHYVTPRERILETVEKVKVELQERLAELNAQNKLVEAQRLEQRTCFDIEMMLELGYCSGIENYSRYLSNREAGE
APPTLFDYLPPEALLIIDESHVTVPQIGGMYRGDRARKETLVNYGFRLPSALDNRPLRFEEFEERSPQTIYISATPGPYE
QEHSDNVAEQVVRPTGLIDPEVEIRPVKTQVDDLMSEIRQVIAQGSRILVTTLTKRMAEDLTEYLSEHGIKVRYLHSDVD
TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAARNVKGRAILYADNMTGSM
QRALTETERRREKQKAFNLKHGITPKGINKSVEDILEGAYIGKRKTMVAEQAPRYTHWSPQELAKQINALEKQMYAHAQN
MEFELAAKIRDEYLLLKEQLMKI

Nucleotide


Download         Length: 1992 bp        

>NTDB_id=585953 MZN67_RS00360 WP_161504339.1 74871..76862(+) (uvrB) [Legionella pneumophila subsp. pneumophila strain DFS-2111020037]
ATGAAAGACTTATTTAAAATTTACTCAAATTACCAACCTGCCGGCGATCAACCTACAGCCATAGCCTCTTTGATTGATGG
TCTTGAATCAGGTTTAGCCAAACAAACATTATTAGGCGTTACCGGTTCTGGTAAAACATTTACTATAGCTCATGTTATTC
AAGCCATGAAAAGACCCACTTTGATCATGGCGCCGAACAAAACGCTTGCGGCTCAACTTTATGGAGAGTTTAAAGCCTTC
TTTCCTGATAATGCCGTAGAATATTTCGTTTCCTACTACGATTATTATCAGCCCGAAGCGTATGTGCCTGCTTCAGATAC
TTTTATAGAAAAGGATGCCTCCATTAATGAACATATAGAGCAGATGCGCTTGTCGGCAACCAAAGCGTTGATTGAACGCA
AAGATGCCATTATTGTAGCGACGGTTTCTGCCATTTATGGATTGGGCGACCCGGATTCCTATCTGCGTATGTTATTACAT
CTCTCCCGTGGAGAACAATCCGATCAACGTAAAATTTTAAAGCGTCTTGCAGAAATGCAGTACACACGAACCAATCTCAG
CCTTGAGCGCGGTCAATTCCGGGTAAATGGTGATGTCATTGATATTTTCCCGGCTGATTCCGAGAAAGAAGCGATAAGAA
TTGAGCTTTTTGACGATGAGGTTGATAATATTGCCCGCTTTGATCCTTTAACAGGAGAAATTTTACAGCGGTTGCCCCGT
GTCACTATTTTTCCTAAAACTCATTATGTTACCCCCAGAGAACGTATTTTAGAAACAGTAGAAAAAGTAAAAGTAGAACT
ACAAGAAAGACTGGCTGAGTTGAATGCTCAAAATAAGTTGGTAGAAGCTCAGCGTTTGGAACAAAGAACTTGTTTTGATA
TTGAAATGATGTTGGAGTTGGGTTATTGCTCTGGCATTGAAAATTACTCGCGTTATTTATCCAACCGCGAAGCCGGGGAA
GCACCGCCTACTCTTTTTGATTACCTCCCGCCGGAGGCCTTGCTAATTATCGACGAATCGCATGTTACTGTTCCTCAAAT
AGGTGGGATGTATCGCGGAGACAGGGCGCGCAAGGAAACCTTGGTTAATTATGGATTTCGCCTGCCTTCTGCCTTGGATA
ATAGGCCTTTGCGTTTTGAAGAATTTGAAGAGCGTTCGCCGCAGACTATTTATATTTCAGCAACTCCAGGACCTTATGAA
CAGGAACATTCGGATAATGTGGCTGAACAAGTGGTAAGACCGACCGGATTGATTGATCCTGAGGTGGAAATCAGGCCGGT
GAAAACTCAGGTCGATGATCTTATGTCTGAAATCAGACAGGTGATTGCTCAGGGCAGCCGTATTCTTGTTACGACATTAA
CCAAACGCATGGCAGAGGATTTGACAGAGTATCTGAGTGAGCACGGGATCAAGGTGCGCTATTTGCATTCCGACGTCGAT
ACGGTTGAGCGCATGGAAATTATTCGTGATTTGCGTTTGGGTGAGTTTGATGTTCTGGTAGGGATTAATTTATTGCGAGA
AGGTCTTGATATGCCCGAGGTTGCTCTTGTTGCGATTTTGGATGCTGACAAGGAGGGGTTTTTGCGATCGGAGCGTTCTT
TAATTCAAACGATTGGCCGTGCAGCCCGTAATGTGAAGGGGCGAGCTATTTTGTATGCCGATAACATGACCGGTTCGATG
CAAAGAGCATTGACGGAAACAGAGAGACGACGTGAAAAACAAAAGGCATTCAATTTGAAACATGGCATTACTCCCAAGGG
TATTAATAAATCAGTTGAGGATATTTTGGAGGGTGCCTATATCGGTAAACGAAAAACAATGGTTGCTGAACAAGCTCCCC
GATATACCCATTGGTCTCCTCAGGAATTGGCAAAACAGATTAATGCACTGGAAAAACAAATGTATGCTCATGCTCAAAAT
ATGGAATTTGAATTGGCAGCTAAAATTCGGGATGAATACCTGCTATTAAAAGAGCAGCTCATGAAGATATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(15-143)

Helicase conserved C-terminal domain (Helicase_C)

(441-543)

UvrB interaction domain (UvrB_inter)

(159-249)

Ultra-violet resistance protein B (UvrB)

(551-592)

UvrB/uvrC motif (UVR)

(625-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.896

98.492

0.551
  uvrB Streptococcus pneumoniae R6

55.896

98.492

0.551
  uvrB Streptococcus pneumoniae D39

55.896

98.492

0.551