Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KVP03_RS03560 Genome accession   NZ_CP077959
Coordinates   698370..698858 (+) Length   162 a.a.
NCBI ID   WP_038674547.1    Uniprot ID   A0A380JNM1
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ_14-145     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 693370..703858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KVP03_RS10535 (KVP03_03510) - 693456..694754 (-) 1299 WP_330166123.1 LPXTG cell wall anchor domain-containing protein -
  KVP03_RS03535 (KVP03_03515) - 694974..695240 (-) 267 WP_043040081.1 hypothetical protein -
  KVP03_RS03540 (KVP03_03520) mutY 695531..696679 (-) 1149 WP_230923220.1 A/G-specific adenine glycosylase -
  KVP03_RS03545 - 696768..696993 (+) 226 Protein_641 HicB family protein -
  KVP03_RS03550 (KVP03_03525) - 697748..697942 (+) 195 WP_230923221.1 hypothetical protein -
  KVP03_RS03555 (KVP03_03530) rpsF 698061..698351 (+) 291 WP_012514997.1 30S ribosomal protein S6 -
  KVP03_RS03560 (KVP03_03535) ssbA 698370..698858 (+) 489 WP_038674547.1 single-stranded DNA-binding protein Machinery gene
  KVP03_RS03565 (KVP03_03540) rpsR 699017..699256 (+) 240 WP_002983142.1 30S ribosomal protein S18 -
  KVP03_RS03570 (KVP03_03545) - 699522..700172 (-) 651 WP_230923222.1 DUF1129 domain-containing protein -
  KVP03_RS03575 (KVP03_03550) - 700431..701375 (-) 945 WP_043025211.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17822.66 Da        Isoelectric Point: 4.9008

>NTDB_id=585650 KVP03_RS03560 WP_038674547.1 698370..698858(+) (ssbA) [Streptococcus equi subsp. zooepidemicus strain SEZ_14-145]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRAFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREANSSGSYGGGFNSSPATNSYSAPAQQTPNFGRDESPFGGSNPMDISDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=585650 KVP03_RS03560 WP_038674547.1 698370..698858(+) (ssbA) [Streptococcus equi subsp. zooepidemicus strain SEZ_14-145]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGACGCAGAGCTTCGATACACTCCAAGTCAGGTGGCAGTTGC
TACGTTTACACTTGCTGTTAATCGCGCCTTTAAGAGCCAAAATGGTGAGCGCGAAGCGGATTTCATTAACTGTGTGATCT
GGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAAAAAGGGTGCCTTGATTGGGATTACAGGACGTATTCAGACCCGT
AACTACGAAAACCAACAGGGGCAGCGTGTGTATGTAACCGAGGTTGTTGCAGATAATTTCCAAATGCTGGAAAGTCGTGC
TACACGTGAGGCGAACTCGTCTGGCTCATATGGTGGTGGTTTTAATAGCTCACCGGCAACCAATAGCTATTCAGCGCCTG
CTCAGCAAACACCTAACTTTGGCAGAGATGAAAGTCCATTTGGCGGCTCAAATCCAATGGATATTTCAGATGACGATCTT
CCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380JNM1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.046

100

0.623
  ssb Latilactobacillus sakei subsp. sakei 23K

57.895

100

0.611
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.955

68.519

0.377