Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   MW889_RS11410 Genome accession   NZ_CP095867
Coordinates   2410689..2412710 (-) Length   673 a.a.
NCBI ID   WP_004707569.1    Uniprot ID   A0AA36K9Y9
Organism   Acinetobacter nosocomialis strain 11J360     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2405689..2417710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW889_RS11385 (MW889_11405) - 2405707..2406381 (-) 675 WP_006581331.1 hypothetical protein -
  MW889_RS11390 (MW889_11410) - 2406393..2407127 (-) 735 WP_004885863.1 hypothetical protein -
  MW889_RS11395 (MW889_11415) - 2407277..2408734 (-) 1458 WP_004885861.1 glyceraldehyde-3-phosphate dehydrogenase -
  MW889_RS11400 (MW889_11420) rarD 2408951..2409898 (-) 948 WP_079376984.1 EamA family transporter RarD -
  MW889_RS11405 (MW889_11425) - 2410007..2410594 (-) 588 WP_002052730.1 lipocalin family protein -
  MW889_RS11410 (MW889_11430) uvrB 2410689..2412710 (-) 2022 WP_004707569.1 excinuclease ABC subunit UvrB Machinery gene
  MW889_RS11415 (MW889_11435) - 2412890..2413681 (+) 792 WP_002052788.1 hypothetical protein -
  MW889_RS11420 (MW889_11440) - 2413825..2415261 (+) 1437 WP_004707564.1 diguanylate cyclase -
  MW889_RS11425 (MW889_11445) - 2415291..2415470 (-) 180 WP_000139632.1 hypothetical protein -
  MW889_RS11430 (MW889_11450) - 2415679..2416914 (+) 1236 WP_006581845.1 pyridoxal phosphate-dependent aminotransferase -
  MW889_RS11435 (MW889_11455) - 2416966..2417376 (-) 411 WP_004885853.1 GFA family protein -

Sequence

Protein


Download         Length: 673 a.a.        Molecular weight: 77234.01 Da        Isoelectric Point: 5.3351

>NTDB_id=585377 MW889_RS11410 WP_004707569.1 2410689..2412710(-) (uvrB) [Acinetobacter nosocomialis strain 11J360]
MNENQPFDLVTHYQPAGDQPQAIEKLVNGVEKGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMAHNKTLAAQLYGEFK
AFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRLSATRALLERRDAIIVASVSAIYGLGDPNAYMQML
LHVVQGDRVSRDEIIRRLVEMQYTRNELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKV
PRVTIYPKSHYVTPKDNLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTNGIENYSRHLSGRPA
GEAPPTLFDYVPDDALLIIDESHVTVPQIGAMYKGDRSRKENLVNYGFRLPSALDNRPMKFEEWERIVPTTIFVSATPAK
YELEKSEQVVEQVVRPTGLIDPEIEVRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSD
IDTVERVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVKGKAILYADRITD
SMQKAIDETERRRAKQIEFNELHGITPRSAVRQAVKEIDTGEVLSDDQIDEKILEQAQALSADDRHILSDPKLFSKHITK
LEKEMLKASKDLQFEQAARIRDEIVRLKAQMLQ

Nucleotide


Download         Length: 2022 bp        

>NTDB_id=585377 MW889_RS11410 WP_004707569.1 2410689..2412710(-) (uvrB) [Acinetobacter nosocomialis strain 11J360]
GTGAACGAAAATCAACCTTTCGATTTGGTCACTCATTACCAGCCAGCGGGTGATCAGCCACAGGCAATTGAAAAGCTGGT
AAATGGCGTCGAAAAAGGTTTTCGTAATCAGTTACTTTTGGGCGTGACTGGTTCCGGTAAGACCTATACCATGGCAAACG
TGATTGCCCAAACACAGCGACCAACCATTGTGATGGCGCACAATAAGACATTAGCAGCCCAGCTTTATGGTGAATTTAAA
GCCTTCTTCCCAAATAATGCAGTTGAATACTTCGTAAGTTATTACGACTACTATCAACCCGAGGCTTATGTTCCGTCTTC
AGATACATTTATTGAAAAAGATGCAGCAATTAATGACCATATTGACCAGATGCGTTTATCTGCAACACGTGCCTTGTTAG
AGCGTCGTGATGCAATTATTGTAGCTTCTGTTTCTGCTATTTATGGTTTGGGTGACCCAAATGCCTATATGCAAATGTTA
TTGCATGTGGTTCAGGGTGACCGAGTGAGTCGAGACGAAATTATTCGCCGTTTGGTTGAAATGCAATATACCCGTAATGA
GCTTGAATTTTTACGTGGTACTTATCGAATTCGTGGCGAAATTATTGATATCTTCCCGGCAGAATCTGACCAACACGCAA
TTCGTATTGAACTTTTTGATGATGAAGTAGATTCAATTCGTTGGTTTGATCCACTCACCGGTAAGATGGTGCGCAAAGTA
CCACGTGTTACGATTTATCCGAAAAGTCATTATGTAACGCCAAAAGACAACTTAACGCGTGCTATTGATACCATTAAGGA
TGAACTTCAAGACCAGCTTAAGTTCTTCCGTGAACATGACAAGTTGCTTGAGGCTCAGCGTATCGAACAGCGTACTCGTT
ATGATTTGGAAATGATGCAGCAGTTAGGTTATACCAATGGTATTGAAAACTACTCTCGTCATTTATCAGGCCGTCCAGCA
GGTGAAGCACCACCGACATTATTTGATTATGTACCGGACGATGCTTTACTTATTATTGATGAGTCACATGTAACGGTCCC
TCAAATTGGCGCAATGTATAAAGGTGACCGTTCACGTAAAGAAAACTTGGTGAATTATGGTTTCCGTTTACCAAGTGCGC
TTGATAACCGCCCAATGAAATTTGAAGAGTGGGAACGTATTGTTCCGACCACTATTTTTGTGAGTGCAACGCCAGCCAAA
TACGAGTTGGAGAAGTCAGAACAAGTGGTTGAGCAGGTCGTTCGTCCTACAGGTTTGATTGATCCTGAAATTGAAGTTCG
CCCAGTACTTACTCAAGTCGATGATGTTCTTTCTGAAATTAATATTCGTAAGAACTTAAATGAACGTGTATTGGTGACGA
CTTTAACAAAACGTATGGCGGAAGATTTAACATCTTATTTAAAAGAATATGGTGTTAAGGTCGCTTATTTGCACTCGGAT
ATTGATACGGTTGAACGTGTCAAAATTATTCATGAGTTACGTACAGGCGTATTTGATGTTTTGGTCGGTATTAACTTACT
TCGTGAAGGCTTAGATATGCCAGAGGTTTCTTTAGTTGCTATTTTAGATGCAGATAAAGAGGGCTTCTTACGTTCAGAAC
GTTCACTTATTCAGACCATTGGTCGTGCTGCGCGAAATGTGAAAGGTAAGGCAATTTTATATGCAGATAGAATTACCGAC
TCTATGCAAAAAGCAATTGATGAGACAGAACGCCGTAGAGCTAAACAAATCGAGTTTAACGAGCTGCATGGTATTACACC
ACGTAGTGCAGTCCGTCAGGCCGTGAAAGAAATTGATACGGGTGAAGTGCTTTCAGATGATCAAATTGATGAGAAAATAT
TGGAGCAGGCACAAGCACTAAGTGCTGATGACCGTCATATTCTTTCTGACCCTAAATTGTTCAGTAAGCATATTACTAAG
CTTGAGAAAGAAATGTTAAAGGCGTCTAAAGATCTACAATTTGAGCAAGCGGCTCGTATTCGTGATGAAATCGTTCGTTT
AAAAGCGCAAATGTTGCAATAA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(161-251)

UvrB/uvrC motif (UVR)

(638-670)

Helicase conserved C-terminal domain (Helicase_C)

(442-545)

Type III restriction enzyme, res subunit (ResIII)

(17-89)

Ultra-violet resistance protein B (UvrB)

(553-593)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36K9Y9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.698

99.406

0.574
  uvrB Streptococcus pneumoniae R6

57.698

99.406

0.574
  uvrB Streptococcus pneumoniae D39

57.698

99.406

0.574