Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   KU540_RS08660 Genome accession   NZ_CP077894
Coordinates   1709504..1709950 (+) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 329     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1704504..1714950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU540_RS08625 (KU540_08575) - 1704998..1705201 (+) 204 WP_000087561.1 YqgQ family protein -
  KU540_RS08630 (KU540_08580) - 1705198..1706184 (+) 987 WP_000161307.1 ROK family glucokinase -
  KU540_RS08635 (KU540_08585) - 1706184..1706513 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  KU540_RS08640 (KU540_08590) - 1706510..1707133 (+) 624 WP_001223009.1 MBL fold metallo-hydrolase -
  KU540_RS08645 (KU540_08595) comGA 1707185..1708159 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  KU540_RS08650 (KU540_08600) comGB 1708131..1709201 (+) 1071 WP_000776414.1 competence type IV pilus assembly protein ComGB Machinery gene
  KU540_RS08655 (KU540_08605) comGC 1709215..1709526 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  KU540_RS08660 (KU540_08610) comGD 1709504..1709950 (+) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  KU540_RS08665 (KU540_08615) comGE 1709937..1710236 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  KU540_RS08670 (KU540_08620) comGF 1710154..1710651 (+) 498 WP_001796472.1 competence type IV pilus minor pilin ComGF Machinery gene
  KU540_RS08675 (KU540_08625) - 1710748..1710894 (+) 147 WP_001789879.1 hypothetical protein -
  KU540_RS08680 (KU540_08630) - 1710884..1711408 (+) 525 WP_001015120.1 shikimate kinase -
  KU540_RS08685 (KU540_08635) gcvT 1711567..1712658 (+) 1092 WP_000093340.1 glycine cleavage system aminomethyltransferase GcvT -
  KU540_RS08690 (KU540_08640) gcvPA 1712678..1714024 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=584701 KU540_RS08660 WP_001796473.1 1709504..1709950(+) (comGD) [Staphylococcus aureus strain 329]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=584701 KU540_RS08660 WP_001796473.1 1709504..1709950(+) (comGD) [Staphylococcus aureus strain 329]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAATCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
CATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993