Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   I872_RS03095 Genome accession   NC_021175
Coordinates   633482..634711 (+) Length   409 a.a.
NCBI ID   WP_015604700.1    Uniprot ID   -
Organism   Streptococcus cristatus AS 1.3089     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 628482..639711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I872_RS03060 (I872_03050) endA 628586..629434 (+) 849 WP_015604694.1 DNA/RNA non-specific endonuclease Machinery gene
  I872_RS03065 (I872_03055) - 629642..630601 (+) 960 WP_015604695.1 ROK family glucokinase -
  I872_RS03070 (I872_03060) - 630646..631053 (+) 408 WP_015604696.1 hypothetical protein -
  I872_RS03075 (I872_03065) - 631137..631976 (+) 840 WP_015604697.1 thymidylate synthase -
  I872_RS03080 (I872_03070) - 632112..632597 (+) 486 WP_015604698.1 hypothetical protein -
  I872_RS03085 (I872_03075) - 632751..633263 (+) 513 WP_015604699.1 dihydrofolate reductase -
  I872_RS03095 (I872_03080) clpX 633482..634711 (+) 1230 WP_015604700.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  I872_RS03100 (I872_03085) yihA 634721..635308 (+) 588 WP_015604701.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  I872_RS03105 (I872_03090) - 635591..636289 (+) 699 WP_015604702.1 glucosaminidase domain-containing protein -
  I872_RS03110 (I872_03095) mmuM 636426..637373 (+) 948 WP_015604703.1 homocysteine S-methyltransferase -
  I872_RS03115 (I872_03100) - 637487..638284 (+) 798 WP_015604704.1 formate/nitrite transporter family protein -
  I872_RS03120 (I872_03105) - 638412..638753 (+) 342 WP_015604705.1 hypothetical protein -
  I872_RS03125 (I872_03110) rplJ 638985..639485 (+) 501 WP_015604706.1 50S ribosomal protein L10 -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45483.95 Da        Isoelectric Point: 4.4356

>NTDB_id=58442 I872_RS03095 WP_015604700.1 633482..634711(+) (clpX) [Streptococcus cristatus AS 1.3089]
MPTNRNNEMMVYCSFCGKNQDEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPQELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDSREEDDVELQKSNILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENI
LLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNKAIDEGASYMQAIVADDIQKFGIIPELIGRLPVFAALEQLTVDDLVRI
LNEPRNALVKQYQTLLSYDDVELEFDEEALQAIARKAIERKTGARGLRSIIEETMMDVMFEVPSQENVKLVRITKEAVDG
TDKPILETA

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=58442 I872_RS03095 WP_015604700.1 633482..634711(+) (clpX) [Streptococcus cristatus AS 1.3089]
ATGCCTACAAATCGTAATAATGAGATGATGGTATATTGTTCTTTCTGTGGAAAGAATCAGGACGAAGTCCAAAAAATTAT
TGCGGGCAACAATGCCTTTATCTGTAATGAATGTGTCGAGTTGGCGCAGGAAATTATCCGAGAAGAATTAGCTGAGGAAG
TTCTAGCTGATCTTTCTGAAGTACCAAAACCGCAAGAATTGCTCAATATCTTGAACCACTATGTGATCGGTCAGGATCGT
GCTAAGCGAGCTTTGGCTGTTGCTGTTTACAATCACTACAAGCGGATCAATTTTCATGATAGCCGCGAAGAGGATGATGT
GGAGCTGCAAAAATCCAACATCCTCATGATTGGTCCAACTGGATCTGGGAAAACCTTCCTGGCTCAGACCTTGGCGCGCA
GTCTCAATGTTCCTTTTGCTATCGCGGATGCTACTGCTTTAACTGAGGCTGGCTATGTCGGTGAAGACGTGGAAAATATC
TTGCTCAAGCTCTTACAGGCAGCTGACTTTAATATCGAGCGAGCAGAACGTGGCATCATCTATGTGGATGAAATCGATAA
GATTGCTAAGAAGAGTGAAAATGTTTCTATCACTCGTGATGTTTCAGGTGAGGGTGTTCAGCAAGCCTTGCTGAAGATTA
TCGAAGGAACAGTTGCTAGCGTGCCTCCTCAGGGTGGTCGTAAGCATCCACAGCAAGAAATGATTCAGGTTGATACCAAG
AACATTCTCTTTATCGTTGGTGGTGCTTTTGACGGTATCGAAGAAATTGTTAAACAACGTCTTGGTGAGAAGATTATCGG
TTTCGGTCAAAATAATAAGGCAATTGATGAAGGTGCGTCTTATATGCAAGCCATTGTTGCTGACGATATTCAAAAATTTG
GAATTATTCCTGAGTTGATCGGTCGTTTGCCAGTTTTTGCAGCCCTAGAGCAGCTGACTGTTGATGATTTGGTTCGCATT
TTGAATGAACCGAGAAATGCGCTAGTGAAGCAATATCAAACCTTGCTTTCTTATGATGATGTTGAACTTGAATTTGACGA
GGAAGCCCTGCAAGCTATTGCTAGGAAAGCCATCGAACGCAAGACAGGTGCGCGTGGCCTTCGTTCAATTATTGAAGAAA
CCATGATGGATGTCATGTTTGAAGTGCCGAGTCAGGAAAATGTCAAGCTGGTTCGTATCACGAAGGAAGCAGTGGACGGC
ACAGACAAGCCAATCTTGGAAACTGCCTAG

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-389)

AAA domain (Cdc48 subfamily) (AAA_2)

(110-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.553

100

0.866
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.354

98.044

0.572

Multiple sequence alignment