Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   B1NLA3E_RS17335 Genome accession   NC_021171
Coordinates   3611804..3612553 (-) Length   249 a.a.
NCBI ID   WP_041580643.1    Uniprot ID   -
Organism   Bacillus sp. 1NLA3E     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3606804..3617553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1NLA3E_RS17310 (B1NLA3E_16690) - 3607291..3607863 (-) 573 WP_015595131.1 Maf family protein -
  B1NLA3E_RS17315 (B1NLA3E_16695) - 3608065..3609207 (-) 1143 WP_015595132.1 SPOR domain-containing protein -
  B1NLA3E_RS17320 (B1NLA3E_16700) - 3609380..3610156 (-) 777 WP_015595133.1 pilus assembly protein PilO -
  B1NLA3E_RS17325 (B1NLA3E_16705) - 3610153..3610791 (-) 639 WP_015595134.1 DUF3185 family protein -
  B1NLA3E_RS17330 (B1NLA3E_16710) pilM 3610794..3611786 (-) 993 WP_015595135.1 pilus assembly protein PilM -
  B1NLA3E_RS17335 (B1NLA3E_16715) comC 3611804..3612553 (-) 750 WP_041580643.1 A24 family peptidase Machinery gene
  B1NLA3E_RS17340 (B1NLA3E_16720) - 3612579..3613007 (-) 429 WP_015595137.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  B1NLA3E_RS17345 (B1NLA3E_16725) - 3613114..3614325 (-) 1212 WP_015595138.1 type II secretion system F family protein -
  B1NLA3E_RS17350 (B1NLA3E_16730) pilT 3614327..3615367 (-) 1041 WP_015595139.1 type IV pilus twitching motility protein PilT Machinery gene
  B1NLA3E_RS17355 (B1NLA3E_16735) - 3615380..3617041 (-) 1662 WP_015595140.1 ATPase, T2SS/T4P/T4SS family -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 26925.68 Da        Isoelectric Point: 9.0317

>NTDB_id=58407 B1NLA3E_RS17335 WP_041580643.1 3611804..3612553(-) (comC) [Bacillus sp. 1NLA3E]
MLYLLLFIYGILFGSFYNVVGLRVPVGQSIVSPRSACPTCGHQLRAFELIPVLSYLFQGGKCRVCKTGISPIYPIIELFT
GVLFATAPLVVGWGSELLIALTLISLFIIILVSDVAYMLIPDKVLLVFAGIFLMERLFFPLLPWWDSLLGAAIGFVVLLA
IALVSKGGMGGGDIKLFALIGFVVGVKILLLAFFLSTLFGAIIGGAGMAVRIFEKGKPIPFGPFIGAGTLVAYYYGDKII
QAYFNLFFS

Nucleotide


Download         Length: 750 bp        

>NTDB_id=58407 B1NLA3E_RS17335 WP_041580643.1 3611804..3612553(-) (comC) [Bacillus sp. 1NLA3E]
TTGTTATATTTACTACTATTCATATACGGGATATTATTCGGCTCCTTCTACAACGTAGTCGGCCTCCGAGTGCCAGTAGG
GCAGTCAATCGTTTCACCACGCTCAGCATGTCCAACATGCGGGCATCAACTTAGAGCTTTCGAACTAATACCAGTTTTAT
CATATTTATTTCAAGGGGGGAAATGCCGTGTCTGTAAAACGGGCATTTCGCCCATTTATCCTATCATTGAGCTTTTTACC
GGAGTGTTGTTTGCAACCGCTCCATTAGTCGTTGGCTGGGGCAGTGAGCTGCTGATTGCCTTGACACTGATTTCACTGTT
TATTATTATTCTAGTATCAGATGTTGCGTATATGTTGATCCCTGATAAAGTTTTGCTTGTATTTGCAGGGATTTTTTTAA
TGGAACGCCTTTTCTTTCCACTTTTGCCATGGTGGGACTCATTACTTGGAGCGGCAATTGGCTTTGTTGTTCTTTTAGCG
ATTGCGCTTGTTAGTAAAGGTGGTATGGGCGGTGGAGACATTAAACTATTCGCTCTTATCGGCTTTGTTGTAGGGGTCAA
AATCTTATTACTAGCATTTTTTTTATCAACCTTGTTTGGTGCTATAATTGGTGGAGCTGGAATGGCTGTACGGATTTTCG
AAAAAGGAAAGCCGATTCCGTTCGGCCCGTTTATTGGCGCTGGAACGCTCGTTGCCTATTATTATGGTGATAAGATCATT
CAAGCGTATTTTAACTTATTTTTCTCATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(102-204)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

49.587

97.189

0.482
  pilD Vibrio cholerae strain A1552

32.867

100

0.378

Multiple sequence alignment