Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   MW397_RS22745 Genome accession   NZ_CP095529
Coordinates   4773727..4774317 (-) Length   196 a.a.
NCBI ID   WP_000633675.1    Uniprot ID   -
Organism   Escherichia coli strain GN06156     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4768727..4779317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW397_RS22730 (MW397_22720) uhpT 4769367..4770758 (-) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -
  MW397_RS22735 (MW397_22725) uhpC 4770896..4772215 (-) 1320 WP_001309854.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  MW397_RS22740 (MW397_22730) uhpB 4772225..4773727 (-) 1503 WP_001322651.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  MW397_RS22745 (MW397_22735) letA 4773727..4774317 (-) 591 WP_000633675.1 transcriptional regulator UhpA Regulator
  MW397_RS22750 (MW397_22740) - 4774479..4775948 (-) 1470 WP_001309856.1 hypothetical protein -
  MW397_RS22755 (MW397_22745) - 4776224..4776706 (-) 483 WP_038428612.1 hypothetical protein -
  MW397_RS22760 (MW397_22750) ilvN 4777784..4778074 (-) 291 WP_001181706.1 acetolactate synthase small subunit -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20905.30 Da        Isoelectric Point: 5.9982

>NTDB_id=583796 MW397_RS22745 WP_000633675.1 4773727..4774317(-) (letA) [Escherichia coli strain GN06156]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELISAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=583796 MW397_RS22745 WP_000633675.1 4773727..4774317(-) (letA) [Escherichia coli strain GN06156]
ATGATCACCGTTGCCCTTATAGACGATCACCTTATCGTCCGCTCCGGCTTTGCGCAGTTGCTGGGGCTGGAACCTGATTT
GCAAGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGGAGCTGCTAAGCCAGCTGCCGAAAGGTATGGCGACGATTATGCTCTCCGTT
CATGACAGTCCGGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCGCGCGGCTTTCTCTCCAAACGCTGTAGCCCGGATGA
ACTGATTTCTGCGGTGCATACGGTTGCCACGGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GCCAGGACCCGCTAACCAAACGTGAACGCCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTAGGTTTGTCGCCAAAAACTGTGCATGTACATCGTGCCAACCTGATGGAAAAACTGGGTGTCAGTAACGACGTTGA
ACTGGCGCGCCGCATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Bacterial regulatory proteins, luxR family (GerE)

(136-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38

100

0.388
  letA Legionella pneumophila strain ERS1305867

38

100

0.388
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378