Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   KU217_RS01465 Genome accession   NZ_CP077835
Coordinates   309427..310167 (+) Length   246 a.a.
NCBI ID   WP_049581056.1    Uniprot ID   A0A0J8T5T6
Organism   Acinetobacter baumannii strain DETAB-P65     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 304427..315167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU217_RS01450 (KU217_01450) ponA 305014..307569 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  KU217_RS01455 (KU217_01455) pilM 307731..308789 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  KU217_RS01460 (KU217_01460) pilN 308789..309430 (+) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  KU217_RS01465 (KU217_01465) pilO 309427..310167 (+) 741 WP_049581056.1 type 4a pilus biogenesis protein PilO Machinery gene
  KU217_RS01470 (KU217_01470) pilP 310178..310705 (+) 528 WP_071210840.1 pilus assembly protein PilP Machinery gene
  KU217_RS01475 (KU217_01475) pilQ 310773..312938 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  KU217_RS01480 (KU217_01480) aroK 312950..313519 (+) 570 WP_000643712.1 shikimate kinase AroK -
  KU217_RS01485 (KU217_01485) aroB 313548..314630 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27898.68 Da        Isoelectric Point: 4.8357

>NTDB_id=583453 KU217_RS01465 WP_049581056.1 309427..310167(+) (pilO) [Acinetobacter baumannii strain DETAB-P65]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGTTDTSEQTGKAPAASASTY
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=583453 KU217_RS01465 WP_049581056.1 309427..310167(+) (pilO) [Acinetobacter baumannii strain DETAB-P65]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTATGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCGAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
TATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGACAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCCTCAACGTAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J8T5T6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.187

100

0.992
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683