Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   KU217_RS01460 Genome accession   NZ_CP077835
Coordinates   308789..309430 (+) Length   213 a.a.
NCBI ID   WP_000201223.1    Uniprot ID   N9LAP0
Organism   Acinetobacter baumannii strain DETAB-P65     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 303789..314430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU217_RS01440 (KU217_01440) - 303837..304169 (+) 333 WP_000169599.1 hypothetical protein -
  KU217_RS01445 (KU217_01445) - 304172..304996 (+) 825 WP_002019666.1 putative RNA methyltransferase -
  KU217_RS01450 (KU217_01450) ponA 305014..307569 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  KU217_RS01455 (KU217_01455) pilM 307731..308789 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  KU217_RS01460 (KU217_01460) pilN 308789..309430 (+) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  KU217_RS01465 (KU217_01465) pilO 309427..310167 (+) 741 WP_049581056.1 type 4a pilus biogenesis protein PilO Machinery gene
  KU217_RS01470 (KU217_01470) pilP 310178..310705 (+) 528 WP_071210840.1 pilus assembly protein PilP Machinery gene
  KU217_RS01475 (KU217_01475) pilQ 310773..312938 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  KU217_RS01480 (KU217_01480) aroK 312950..313519 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23999.36 Da        Isoelectric Point: 5.3968

>NTDB_id=583452 KU217_RS01460 WP_000201223.1 308789..309430(+) (pilN) [Acinetobacter baumannii strain DETAB-P65]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=583452 KU217_RS01460 WP_000201223.1 308789..309430(+) (pilN) [Acinetobacter baumannii strain DETAB-P65]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

72.115

97.653

0.704