Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   MW398_RS10350 Genome accession   NZ_CP095505
Coordinates   1898007..1898666 (+) Length   219 a.a.
NCBI ID   WP_001221493.1    Uniprot ID   Q3YXL4
Organism   Escherichia coli strain GN02050     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1893007..1903666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW398_RS10335 (MW398_10325) ygiS 1895212..1896819 (-) 1608 WP_001468194.1 ABC transporter substrate-binding protein -
  MW398_RS10340 (MW398_10330) ygiV 1896928..1897410 (-) 483 WP_021538160.1 AraC family transcriptional regulator -
  MW398_RS10345 (MW398_10335) ygiW 1897463..1897855 (-) 393 WP_000712658.1 OB fold stress tolerance protein YgiW -
  MW398_RS10350 (MW398_10340) ciaR 1898007..1898666 (+) 660 WP_001221493.1 quorum sensing response regulator transcription factor QseB Regulator
  MW398_RS10355 (MW398_10345) qseC 1898663..1900012 (+) 1350 WP_000673388.1 quorum sensing histidine kinase QseC -
  MW398_RS10360 (MW398_10350) ygiZ 1900058..1900390 (-) 333 WP_000914696.1 DUF2645 family protein -
  MW398_RS10365 (MW398_10355) - 1900397..1901107 (-) 711 WP_000834024.1 hypothetical protein -
  MW398_RS10370 (MW398_10360) - 1901110..1901589 (-) 480 WP_000069056.1 Hcp family type VI secretion system effector -
  MW398_RS10375 (MW398_10365) mdaB 1901839..1902420 (+) 582 WP_000065430.1 NADPH:quinone oxidoreductase MdaB -
  MW398_RS10380 (MW398_10370) ygiN 1902451..1902765 (+) 315 WP_000633738.1 putative quinol monooxygenase -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24687.63 Da        Isoelectric Point: 6.9850

>NTDB_id=583238 MW398_RS10350 WP_001221493.1 1898007..1898666(+) (ciaR) [Escherichia coli strain GN02050]
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA
RDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL
LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK

Nucleotide


Download         Length: 660 bp        

>NTDB_id=583238 MW398_RS10350 WP_001221493.1 1898007..1898666(+) (ciaR) [Escherichia coli strain GN02050]
ATGCGAATTTTACTGATAGAAGATGACATGCTGATTGGCGACGGCATCAAAACGGGCCTTAGTAAAATGGGTTTTAGCGT
CGACTGGTTTACACAAGGTCGTCAGGGAAAAGAAGCGCTATATAGCGCGCCTTATGATGCGGTGATCCTGGATTTAACCT
TACCAGGCATGGATGGTCGCGATATTTTGCGCGAATGGCGAGAAAAAGGTCAGCGTGAGCCTGTATTGATCCTGACTGCG
CGCGATGCGCTGGCGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGA
AGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGCAACGTCATGC
TCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACGCTGAAACCAAAAGAATTTGCCCTGCTGGAATTA
CTGATGCGTAACGCTGGTCGGGTACTGCCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAG
TAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTTCATGGTATTGGCT
ACACATTAGGTGAGAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-216)

Response regulator receiver domain (Response_reg)

(3-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3YXL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

38.326

100

0.397
  ciaR Streptococcus pneumoniae D39

38.326

100

0.397
  ciaR Streptococcus pneumoniae R6

38.326

100

0.397
  ciaR Streptococcus pneumoniae TIGR4

38.326

100

0.397
  ciaR Streptococcus mutans UA159

35.874

100

0.365