Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MUY23_RS10600 Genome accession   NZ_CP095162
Coordinates   2154731..2155321 (-) Length   196 a.a.
NCBI ID   WP_004194470.1    Uniprot ID   -
Organism   Streptococcus suis strain TJS75     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2149731..2160321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUY23_RS10565 - 2149736..2150056 (-) 321 WP_002939343.1 DUF1292 domain-containing protein -
  MUY23_RS10570 ruvX 2150068..2150487 (-) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  MUY23_RS10575 - 2150487..2150753 (-) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  MUY23_RS10580 spx 2150853..2151251 (-) 399 WP_002939362.1 transcriptional regulator Spx -
  MUY23_RS10585 recA 2151487..2152638 (-) 1152 WP_011922545.1 recombinase RecA Machinery gene
  MUY23_RS10590 cinA 2152690..2153871 (-) 1182 WP_004194467.1 competence/damage-inducible protein A Machinery gene
  MUY23_RS10595 - 2153908..2154477 (-) 570 WP_004194469.1 DNA-3-methyladenine glycosylase I -
  MUY23_RS10600 ruvA 2154731..2155321 (-) 591 WP_004194470.1 Holliday junction branch migration protein RuvA Machinery gene
  MUY23_RS10605 hexB 2155360..2157297 (-) 1938 WP_004194473.1 DNA mismatch repair endonuclease MutL Machinery gene
  MUY23_RS10610 - 2157499..2158788 (+) 1290 WP_002935134.1 IS4-like element ISSsu2 family transposase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21725.08 Da        Isoelectric Point: 5.0727

>NTDB_id=582791 MUY23_RS10600 WP_004194470.1 2154731..2155321(-) (ruvA) [Streptococcus suis strain TJS75]
MYDYIKGILTKITAKYIVVETQGVGYILQVANPYAYSGQVQQEVTVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQQVAPSSENIALDEAMEAME
ALGYRPAELKKIKKFFEGTNDTAENYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=582791 MUY23_RS10600 WP_004194470.1 2154731..2155321(-) (ruvA) [Streptococcus suis strain TJS75]
ATGTACGACTATATTAAAGGAATTTTAACAAAAATAACTGCAAAATATATTGTGGTAGAAACACAAGGAGTAGGCTATAT
CTTGCAGGTTGCTAATCCCTACGCATACTCTGGACAAGTCCAGCAAGAAGTGACGGTCTATACTCATCAAGTGATTCGAG
AAGATGCTCATTTGCTCTACGGATTTGCTACAGAAAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGTATT
GGTCCAACAACGGCTCTGGCTATTATTGCTGTTGATGATAATGATGGACTTGTTCGTGCTATTGAGCAGAAAAACATTAC
CTACCTGACCAAGTTTCCGAAGATTGGCAAGAAAACAGCCCAGCAGATGATTTTGGACCTGGAAGGCAAGTTTGTCATGA
GCGAAGAAGCGGGTCCTGTTCAACAAGTAGCACCATCCAGTGAAAATATCGCTCTTGATGAAGCTATGGAAGCCATGGAA
GCCCTTGGTTACCGCCCAGCCGAACTCAAGAAAATCAAGAAATTCTTTGAAGGCACCAATGACACCGCTGAAAACTACAT
CAAGTCAGCCCTTAAAATGCTGATGAAGTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

75.635

100

0.76
  ruvA Streptococcus pneumoniae D39

75.635

100

0.76
  ruvA Streptococcus pneumoniae TIGR4

75.635

100

0.76
  ruvA Bacillus subtilis subsp. subtilis str. 168

38.916

100

0.403