Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   SPN034183_RS09650 Genome accession   NC_021028
Coordinates   1783733..1784743 (-) Length   336 a.a.
NCBI ID   WP_000990608.1    Uniprot ID   -
Organism   Streptococcus pneumoniae SPN034183     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1778733..1789743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPN034183_RS09625 (SPN034183_17580) - 1779943..1780236 (-) 294 WP_000977365.1 hypothetical protein -
  SPN034183_RS09630 (SPN034183_17590) - 1780398..1780850 (+) 453 WP_000079154.1 universal stress protein -
  SPN034183_RS09635 (SPN034183_17600) - 1780885..1782273 (-) 1389 WP_000453139.1 Cof-type HAD-IIB family hydrolase -
  SPN034183_RS09640 (SPN034183_17610) - 1782339..1783301 (+) 963 WP_001124777.1 asparaginase -
  SPN034183_RS09645 - 1783298..1783669 (-) 372 WP_001092031.1 hypothetical protein -
  SPN034183_RS09650 (SPN034183_17620) ccpA 1783733..1784743 (-) 1011 WP_000990608.1 catabolite control protein A Regulator
  SPN034183_RS09655 (SPN034183_17630) - 1785168..1785767 (-) 600 WP_000866723.1 response regulator transcription factor -
  SPN034183_RS09660 (SPN034183_17640) - 1785769..1786866 (-) 1098 WP_000893530.1 sensor histidine kinase -
  SPN034183_RS09665 (SPN034183_17650) - 1786866..1787603 (-) 738 WP_000832843.1 ABC transporter permease -
  SPN034183_RS09670 (SPN034183_17660) - 1787605..1788489 (-) 885 WP_000219356.1 ABC transporter ATP-binding protein -
  SPN034183_RS09675 (SPN034183_17670) - 1788476..1788670 (-) 195 WP_000820181.1 hypothetical protein -
  SPN034183_RS13350 (SPN034183_17680) - 1788724..1788858 (-) 135 WP_257617913.1 hypothetical protein -

Sequence


Protein


Download         Length: 336 a.a.        Molecular weight: 37117.02 Da        Isoelectric Point: 5.1698

>NTDB_id=58199 SPN034183_RS09650 WP_000990608.1 1783733..1784743(-) (ccpA) [Streptococcus pneumoniae SPN034183]
MNADDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNITNGYFS
SLAKGIDDIAEMYKYNIVLANSDEDNEKEVSVVNTLFSKQVDGIIYMGYHLTDKIRSEFSRSRTPIVLAGTVDVEHQLPS
VNIDYKQATIDAVSYLAKENERIAFVSGPLVDDINGKVRLVGYKETLKKAGITYSEGLVFESKYSYDDGYDLAERLISSN
ATAAVVTGDELAAGVLNGLADKGVSVPEDFEIITSDDSQISRFTRPNLTTIAQPLYDLGAISMRMLTKIMHKEELEEREV
LLPHGLTERSSTRKRK

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=58199 SPN034183_RS09650 WP_000990608.1 1783733..1784743(-) (ccpA) [Streptococcus pneumoniae SPN034183]
ATGAATGCAGATGATACAGTAACCATTTATGATGTCGCTCGTGAAGCAGGTGTTTCCATGGCGACGGTCAGCCGTGTGGT
CAATGGCAATAAAAATGTAAAAGAGAATACCCGTAAAAAAGTGCTAGAGGTAATTGATCGTTTGGATTATCGTCCAAATG
CAGTTGCGCGTGGTCTTGCAAGTAAAAAGACAACCACTGTCGGTGTCGTGATTCCAAATATTACCAATGGTTATTTTTCG
AGTTTGGCTAAGGGGATTGATGATATTGCAGAAATGTACAAGTACAATATTGTCCTAGCTAATAGCGATGAAGATAACGA
GAAAGAAGTTTCTGTTGTCAATACCCTCTTTTCAAAGCAGGTAGATGGCATTATCTATATGGGTTATCACTTGACAGATA
AAATTCGCTCAGAATTTTCGCGCTCACGTACTCCGATTGTTCTCGCAGGAACTGTCGATGTTGAGCACCAGTTGCCAAGT
GTCAATATTGACTATAAGCAAGCAACAATTGATGCAGTGAGTTACCTTGCTAAAGAAAATGAGCGTATTGCTTTCGTTAG
CGGTCCGCTAGTGGATGACATCAATGGTAAGGTTCGTTTAGTTGGCTACAAGGAAACCTTGAAAAAAGCAGGAATCACTT
ATAGTGAGGGTTTGGTATTTGAATCTAAATATAGCTATGATGATGGTTACGACTTAGCAGAGCGTTTGATTTCATCAAAT
GCAACTGCAGCAGTTGTGACAGGTGATGAGTTGGCAGCAGGAGTCTTGAACGGTTTGGCTGATAAAGGTGTTTCTGTGCC
AGAAGATTTTGAAATTATTACTAGTGATGATTCACAAATCTCACGCTTTACCCGTCCAAACTTGACAACGATTGCCCAAC
CTCTTTATGACCTTGGTGCTATTAGTATGCGTATGTTGACCAAGATTATGCATAAGGAAGAGTTGGAAGAACGTGAAGTT
CTCTTACCTCATGGTTTGACAGAACGTAGCTCAACACGAAAACGTAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

99.405

100

0.994

  ccpA Streptococcus gordonii str. Challis substr. CH1

87.126

99.405

0.866

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

57.402

98.512

0.565


Multiple sequence alignment