Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MP619_RS11090 Genome accession   NZ_CP095081
Coordinates   2234378..2234971 (-) Length   197 a.a.
NCBI ID   WP_129556363.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain WJ001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2229378..2239971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP619_RS11055 (MP619_11025) ruvX 2229380..2229799 (-) 420 WP_003053103.1 Holliday junction resolvase RuvX -
  MP619_RS11060 (MP619_11030) - 2229796..2230065 (-) 270 WP_003045720.1 IreB family regulatory phosphoprotein -
  MP619_RS11065 (MP619_11035) spx 2230177..2230575 (-) 399 WP_003053105.1 transcriptional regulator Spx -
  MP619_RS11070 (MP619_11040) recA 2230804..2231940 (-) 1137 WP_003058758.1 recombinase RecA Machinery gene
  MP619_RS11075 (MP619_11045) cinA 2232045..2233316 (-) 1272 WP_129556361.1 competence/damage-inducible protein A Machinery gene
  MP619_RS11080 (MP619_11050) - 2233440..2233793 (-) 354 WP_003058738.1 VOC family protein -
  MP619_RS11085 (MP619_11055) - 2233796..2234368 (-) 573 WP_129556362.1 DNA-3-methyladenine glycosylase I -
  MP619_RS11090 (MP619_11060) ruvA 2234378..2234971 (-) 594 WP_129556363.1 Holliday junction branch migration protein RuvA Machinery gene
  MP619_RS11095 (MP619_11065) - 2234973..2236193 (-) 1221 WP_268227778.1 MFS transporter -
  MP619_RS11100 (MP619_11070) hexB 2236204..2238186 (-) 1983 WP_129556417.1 DNA mismatch repair endonuclease MutL Machinery gene
  MP619_RS11105 (MP619_11075) - 2238281..2239432 (-) 1152 WP_172596028.1 site-specific integrase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21727.97 Da        Isoelectric Point: 5.7322

>NTDB_id=581885 MP619_RS11090 WP_129556363.1 2234378..2234971(-) (ruvA) [Streptococcus dysgalactiae strain WJ001]
MYDYIKGQLTKITAKYIVVESNGLGYIINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNQGLVNAIDTSDIKYLTKFPKIGKKTAQQMVLDLAGKFVEVPQETSKAKPSTSSNNDQLDEAIEALL
ALGYKATELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 594 bp        

>NTDB_id=581885 MP619_RS11090 WP_129556363.1 2234378..2234971(-) (ruvA) [Streptococcus dysgalactiae strain WJ001]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAAGCAACGGACTGGGCTATAT
TATCAATGTAGCCAATCCTTATAGCTTCACAGATAGTGTCAACCAACTGGTAACTATTTACCTACATCAAGTGATTCGTG
AGGACGCTCATTTGTTGTTTGGGTTTCATACGGAAGACGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGCATT
GGTCCGACAACAGCTCTCGCTATTGTGGCAGTTGATGATAATCAGGGGCTTGTTAATGCCATTGATACCAGTGACATCAA
ATACCTGACTAAATTTCCTAAAATCGGGAAAAAAACGGCACAACAGATGGTTCTTGACTTAGCCGGAAAATTTGTGGAGG
TTCCACAAGAGACCAGTAAAGCAAAACCGTCTACCTCCTCAAACAATGACCAGTTGGATGAGGCTATTGAAGCCCTTCTT
GCCCTAGGTTATAAAGCAACAGAGCTGAAAAAAATTCGTGCCTTCTTTGAGGGAACCTCTGAGACGGCAGAGCAATACAT
CAAATCAGCATTGAAACTGTTAATGAAAGGGTAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(150-195)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

67.513

100

0.675
  ruvA Streptococcus pneumoniae R6

67.513

100

0.675
  ruvA Streptococcus pneumoniae D39

67.513

100

0.675
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.406