Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   MP619_RS06480 Genome accession   NZ_CP095081
Coordinates   1258488..1259186 (+) Length   232 a.a.
NCBI ID   WP_268227688.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain WJ001     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1253488..1264186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP619_RS06460 (MP619_06435) - 1253669..1254780 (+) 1112 WP_089180045.1 IS3-like element IS981 family transposase -
  MP619_RS06465 (MP619_06440) - 1254834..1256000 (-) 1167 Protein_1224 cysteine peptidase family C39 domain-containing protein -
  MP619_RS06475 (MP619_06450) - 1257368..1258422 (+) 1055 WP_268227893.1 IS3 family transposase -
  MP619_RS06480 (MP619_06455) scnR 1258488..1259186 (+) 699 WP_268227688.1 response regulator transcription factor Regulator
  MP619_RS06485 (MP619_06460) - 1259203..1260564 (+) 1362 WP_268227689.1 HAMP domain-containing sensor histidine kinase -
  MP619_RS06490 (MP619_06465) - 1260644..1262509 (-) 1866 WP_268227690.1 SAG1250 family conjugative relaxase -
  MP619_RS06495 (MP619_06470) - 1262496..1262861 (-) 366 WP_268227691.1 MobC family plasmid mobilization relaxosome protein -
  MP619_RS06500 (MP619_06475) - 1262871..1263230 (-) 360 WP_268227692.1 SAG1252 family conjugative relaxosome accessory protein -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26021.04 Da        Isoelectric Point: 7.1342

>NTDB_id=581844 MP619_RS06480 WP_268227688.1 1258488..1259186(+) (scnR) [Streptococcus dysgalactiae strain WJ001]
MNFETQLLNKRILIIDDDVSLSQSIKEVLVNRGFKNISNAYSISEGIDIFSVSKIDFIILDVMLPDGEGYLLAKYVRKTS
DIPILFLTAKNNPDDEVKGLGSGGDDFVTKPFLPKTLIYRIIALLRRAYKNESELITLSSCTIDLNNASVNKNGNQLSLT
PTEIQILRKLYSNKNYIVSTETICDTIWGLDSSGYEKSLMVHIRNIREKIESSPSKPDHLITVKGLGYKLVV

Nucleotide


Download         Length: 699 bp        

>NTDB_id=581844 MP619_RS06480 WP_268227688.1 1258488..1259186(+) (scnR) [Streptococcus dysgalactiae strain WJ001]
ATGAATTTTGAAACACAGTTATTAAACAAACGGATATTAATAATAGATGACGATGTCTCACTTAGTCAATCTATCAAAGA
GGTATTAGTCAATAGAGGATTTAAAAATATTAGTAACGCTTATAGTATTAGCGAGGGCATTGATATTTTTTCTGTATCCA
AGATTGATTTCATCATATTAGATGTAATGTTACCTGATGGTGAGGGGTATTTACTTGCCAAATATGTTAGAAAAACTTCT
GATATTCCAATATTATTTTTAACAGCAAAAAATAATCCTGATGATGAAGTTAAAGGCCTTGGATCAGGTGGTGATGATTT
TGTCACTAAACCATTTCTCCCGAAAACCTTAATATATCGTATCATTGCTCTATTAAGAAGAGCATACAAAAATGAATCCG
AATTAATTACATTGTCTTCTTGTACCATTGATTTAAATAATGCAAGTGTAAATAAAAATGGAAATCAACTTTCACTAACT
CCTACTGAAATACAGATACTACGAAAACTATACAGTAATAAGAACTACATTGTTTCAACAGAAACAATTTGTGATACTAT
TTGGGGACTTGATAGTTCTGGATATGAAAAGTCATTAATGGTACACATTCGAAATATAAGAGAAAAAATAGAATCAAGCC
CTTCTAAACCGGATCATCTTATTACCGTTAAAGGTCTTGGATATAAGCTTGTTGTCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(12-121)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

41.379

100

0.414
  vicR Streptococcus mutans UA159

36.797

99.569

0.366
  micA Streptococcus pneumoniae Cp1015

36.522

99.138

0.362