Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   KSP27_RS00490 Genome accession   NZ_CP077603
Coordinates   107807..108406 (-) Length   199 a.a.
NCBI ID   WP_002221479.1    Uniprot ID   A1KS89
Organism   Neisseria meningitidis strain S4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 102807..113406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSP27_RS00475 pilQ 104268..106577 (-) 2310 WP_002221480.1 type IV pilus secretin PilQ Machinery gene
  KSP27_RS00480 pilP 106596..107141 (-) 546 WP_002214522.1 pilus assembly protein PilP Machinery gene
  KSP27_RS00485 - 107159..107806 (-) 648 WP_002217908.1 type 4a pilus biogenesis protein PilO -
  KSP27_RS00490 pilN 107807..108406 (-) 600 WP_002221479.1 PilN domain-containing protein Machinery gene
  KSP27_RS00495 pilM 108409..109524 (-) 1116 WP_002221478.1 type IV pilus biogenesis protein PilM -
  KSP27_RS00500 - 109675..112071 (+) 2397 WP_002221477.1 penicillin-binding protein 1A -
  KSP27_RS00505 yihA 112192..112821 (-) 630 WP_002217904.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22243.45 Da        Isoelectric Point: 9.5493

>NTDB_id=581560 KSP27_RS00490 WP_002221479.1 107807..108406(-) (pilN) [Neisseria meningitidis strain S4]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYLFIDNMINNQSERNTLLETSIAHLDTELSEIQKLKQE
KDAFLIKKNKVEELQLKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=581560 KSP27_RS00490 WP_002221479.1 107807..108406(-) (pilN) [Neisseria meningitidis strain S4]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAGCGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGTGCCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAACCAGT
CGGAAAGAAACACGCTGCTGGAAACCTCCATCGCACACTTGGATACCGAGCTGTCGGAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGAAAAACAAAGTCGAGGAGCTCCAGCTCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTGACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCCATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1KS89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

99.497

100

0.995