Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   KSP27_RS00480 Genome accession   NZ_CP077603
Coordinates   106596..107141 (-) Length   181 a.a.
NCBI ID   WP_002214522.1    Uniprot ID   Q7DD77
Organism   Neisseria meningitidis strain S4     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 101596..112141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSP27_RS00465 aroB 101635..102714 (-) 1080 WP_002221481.1 3-dehydroquinate synthase -
  KSP27_RS00470 - 102794..103306 (-) 513 WP_002214526.1 shikimate kinase -
  KSP27_RS00475 pilQ 104268..106577 (-) 2310 WP_002221480.1 type IV pilus secretin PilQ Machinery gene
  KSP27_RS00480 pilP 106596..107141 (-) 546 WP_002214522.1 pilus assembly protein PilP Machinery gene
  KSP27_RS00485 - 107159..107806 (-) 648 WP_002217908.1 type 4a pilus biogenesis protein PilO -
  KSP27_RS00490 pilN 107807..108406 (-) 600 WP_002221479.1 PilN domain-containing protein Machinery gene
  KSP27_RS00495 pilM 108409..109524 (-) 1116 WP_002221478.1 type IV pilus biogenesis protein PilM -
  KSP27_RS00500 - 109675..112071 (+) 2397 WP_002221477.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20067.55 Da        Isoelectric Point: 4.6512

>NTDB_id=581559 KSP27_RS00480 WP_002214522.1 106596..107141(-) (pilP) [Neisseria meningitidis strain S4]
MKHYALLISFLALSACSQGSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETDKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIVLNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=581559 KSP27_RS00480 WP_002214522.1 106596..107141(-) (pilP) [Neisseria meningitidis strain S4]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAGGTTCTGAGGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCGCAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGACAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCTGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCGTCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCGCAGAACAAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2IVW
  PDB 4AV2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

100

100

1