Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MUO48_RS01295 Genome accession   NZ_CP094925
Coordinates   260232..261104 (+) Length   290 a.a.
NCBI ID   WP_024273345.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 15     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 255232..266104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUO48_RS01275 (MUO48_01275) ylqF 256068..256952 (+) 885 WP_024273344.1 ribosome biogenesis GTPase YlqF -
  MUO48_RS01280 (MUO48_01280) - 256936..257703 (+) 768 WP_000176409.1 ribonuclease HII -
  MUO48_RS01285 (MUO48_01285) sucC 257812..258978 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  MUO48_RS01290 (MUO48_01290) sucD 259000..259908 (+) 909 WP_000110251.1 succinate--CoA ligase subunit alpha -
  MUO48_RS01295 (MUO48_01295) dprA 260232..261104 (+) 873 WP_024273345.1 DNA-processing protein DprA Machinery gene
  MUO48_RS01300 (MUO48_01300) topA 261278..263353 (+) 2076 WP_001557331.1 type I DNA topoisomerase -
  MUO48_RS01305 (MUO48_01305) trmFO 263509..264816 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33205.48 Da        Isoelectric Point: 8.5385

>NTDB_id=581225 MUO48_RS01295 WP_024273345.1 260232..261104(+) (dprA) [Staphylococcus aureus strain 15]
MLNHILLKLIWSRFTTAQIHLLLKTFPSCCEVDEYERMHILENFCKLLADKKIDAKVNRYKEISVDEIETTIQKTQLNYI
TCFDHNYPYLLKETYNYPIILFYKGNINLLSYPRTLAVVGSRLSGDYTLKALNHLFVSFQQMSFCVVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTSALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=581225 MUO48_RS01295 WP_024273345.1 260232..261104(+) (dprA) [Staphylococcus aureus strain 15]
ATGTTAAATCACATTTTACTTAAATTAATTTGGAGTCGTTTTACTACTGCACAAATACATCTACTTTTAAAAACTTTTCC
TAGTTGTTGTGAAGTAGATGAATATGAACGAATGCATATTCTAGAAAATTTTTGTAAGCTTTTAGCGGATAAAAAAATAG
ATGCTAAAGTTAACCGTTACAAGGAAATTTCTGTTGATGAAATTGAAACAACAATTCAGAAAACCCAATTAAATTATATA
ACTTGTTTTGATCATAATTATCCCTATTTATTAAAAGAAACTTACAATTATCCTATCATTTTGTTCTATAAAGGGAATAT
TAACCTCCTTAGTTATCCGCGCACTTTAGCTGTCGTTGGGTCACGATTATCAGGCGACTATACTTTAAAGGCATTGAATC
ATCTCTTCGTTTCATTTCAACAAATGAGTTTTTGTGTCGTTTCCGGGCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATCAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

65.017

100

0.679
  dprA Staphylococcus aureus N315

66.207

100

0.662
  dprA Lactococcus lactis subsp. cremoris KW2

38.214

96.552

0.369
  dprA Vibrio campbellii strain DS40M4

38.745

93.448

0.362