Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   I6L25_RS12670 Genome accession   NZ_CP077398
Coordinates   2717396..2717806 (-) Length   136 a.a.
NCBI ID   WP_004710569.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain FDAARGOS 1395     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2712396..2722806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L25_RS12640 (I6L25_12640) - 2712481..2712750 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  I6L25_RS12645 (I6L25_12645) rapZ 2712747..2713598 (-) 852 WP_002054547.1 RNase adapter RapZ -
  I6L25_RS12650 (I6L25_12650) panC 2713621..2714469 (-) 849 WP_004710563.1 pantoate--beta-alanine ligase -
  I6L25_RS12655 (I6L25_12655) panB 2714473..2715282 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  I6L25_RS12660 (I6L25_12660) folK 2715328..2715810 (-) 483 WP_002054538.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  I6L25_RS12665 (I6L25_12665) pcnB 2715807..2717270 (-) 1464 WP_004710567.1 polynucleotide adenylyltransferase PcnB -
  I6L25_RS12670 (I6L25_12670) comEA 2717396..2717806 (-) 411 WP_004710569.1 ComEA family DNA-binding protein Machinery gene
  I6L25_RS12675 (I6L25_12675) mazG 2717775..2718581 (-) 807 WP_004710571.1 nucleoside triphosphate pyrophosphohydrolase -
  I6L25_RS12680 (I6L25_12680) - 2718694..2719467 (+) 774 WP_002054535.1 SDR family oxidoreductase -
  I6L25_RS12685 (I6L25_12685) - 2719512..2721818 (-) 2307 WP_002054537.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15631.09 Da        Isoelectric Point: 10.3101

>NTDB_id=581174 I6L25_RS12670 WP_004710569.1 2717396..2717806(-) (comEA) [Acinetobacter nosocomialis strain FDAARGOS 1395]
MRYSMIIWKNNCFILMMLCLGVISTSIFAQSFDQNFQEWKAKQQMYDQKLNVSKSSHSYGSKIYQTKSLNDSIGQIHLNQ
ATVNEFRQLKGIGEKKAQAIVEYRQKNGGFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=581174 I6L25_RS12670 WP_004710569.1 2717396..2717806(-) (comEA) [Acinetobacter nosocomialis strain FDAARGOS 1395]
ATGCGATACAGCATGATAATTTGGAAAAATAATTGTTTTATTTTAATGATGTTGTGCTTAGGTGTGATTTCAACTTCGAT
TTTTGCTCAATCGTTTGATCAGAATTTTCAGGAATGGAAGGCTAAACAGCAGATGTACGACCAAAAGTTAAACGTCTCTA
AATCTTCTCATTCTTATGGTTCTAAAATTTATCAAACGAAGAGTTTAAATGATTCTATTGGGCAGATTCATTTAAATCAG
GCTACTGTAAATGAGTTTCGGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTGGAATACAGGCAAAAGAA
TGGTGGTTTTAAAAATATTGATGAAATTAAAAACGTCAAAGGAATCGGCCCCGCTATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

84.559

100

0.846
  comEA Acinetobacter baumannii D1279779

84.559

100

0.846
  comEA Acinetobacter baylyi ADP1

46.364

80.882

0.375