Detailed information NTG0581020

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I6L36_RS15175
• Genome accession: NZ_CP077378
• Coordinates: 3203588..3204463 (-)
• Length: 291 a.a.
• NCBI ID: WP_043154107.1
• Uniprot ID: A0A6S4T239
• Organism: Aeromonas sp. FDAARGOS 1406
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3198588..3209463

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6L36_RS15150 (I6L36_15150)	-	3200335..3201519 (+)	1185	WP_109111850.1	tetratricopeptide repeat protein	-
I6L36_RS15155 (I6L36_15155)	mutT	3201528..3201932 (+)	405	WP_174213873.1	8-oxo-dGTP diphosphatase MutT	-
I6L36_RS15160 (I6L36_15160)	yacG	3201990..3202184 (-)	195	WP_039040499.1	DNA gyrase inhibitor YacG	-
I6L36_RS15165 (I6L36_15165)	zapD	3202195..3202917 (-)	723	WP_010675825.1	cell division protein ZapD	-
I6L36_RS15170 (I6L36_15170)	coaE	3202955..3203569 (-)	615	WP_109111851.1	dephospho-CoA kinase	-
I6L36_RS15175 (I6L36_15175)	pilD	3203588..3204463 (-)	876	WP_043154107.1	A24 family peptidase	Machinery gene
I6L36_RS15180 (I6L36_15180)	pilC	3204541..3205782 (-)	1242	WP_010675822.1	type II secretion system F family protein	Machinery gene
I6L36_RS15185 (I6L36_15185)	pilB	3205910..3207616 (-)	1707	WP_041213997.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
I6L36_RS15190 (I6L36_15190)	-	3207616..3208059 (-)	444	WP_109111852.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
I6L36_RS15195 (I6L36_15195)	nadC	3208370..3209233 (-)	864	WP_052814467.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32037.15 Da
• Isoelectric Point: 6.8280

>NTDB_id=581020 I6L36_RS15175 WP_043154107.1 3203588..3204463(-) (pilD) [Aeromonas sp. FDAARGOS 1406]
MVPLIELAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMMERAWHAEYSDYFGDGEETPPATGRYNLMVPRSRCPHCDH
PIGALENIPLLSWLWLRGRCRNCHAPISARYPLVELLTALLSVSVAAALAPGWGTLAALLLTWTLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLAGGFVPLADGVVGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS
LAGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWITLLWGDSITRWYLDVVL

Nucleotide

• Length: 876 bp

>NTDB_id=581020 I6L36_RS15175 WP_043154107.1 3203588..3204463(-) (pilD) [Aeromonas sp. FDAARGOS 1406]
ATGGTGCCTTTGATCGAACTGGCCCAGGGCTTGCCCTGGCTCTATCTCTCCTTGATTTTCCTTTTCTCCCTGATGGTGGG
CAGCTTCCTGAACGTGGTGATCCATCGCCTGCCCATCATGATGGAGCGGGCCTGGCATGCCGAATACAGCGACTATTTCG
GTGACGGTGAAGAGACTCCTCCTGCAACCGGACGATACAACCTCATGGTGCCTCGCTCCCGCTGCCCCCACTGCGACCAC
CCCATAGGGGCACTGGAGAACATTCCCCTGCTGAGCTGGCTATGGCTCAGGGGGCGCTGCCGCAACTGCCACGCCCCCAT
TTCGGCTCGCTATCCCCTGGTCGAGCTGCTCACCGCCCTGCTGTCGGTCTCGGTAGCAGCCGCGCTTGCCCCCGGCTGGG
GCACCCTTGCCGCTCTGTTGCTCACCTGGACATTGGTCGCACTGACCTTCATCGACCTGGACAAGATGCTCTTGCCGGAT
CAGCTCACCCTGCCCCTGCTCTGGGGTGGCCTGCTGTTCAATCTGGCGGGCGGTTTCGTGCCCCTGGCCGATGGGGTGGT
CGGCGCCATGGCTGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCT
ATGGCGACTTCAAACTGCTGGCGGCACTGGGCGCCTGGCTCGGCTGGCAAGCCTTGCCCATCGTGCTGCTGCTCTCTTCG
CTGGCGGGCGCCATCATCGGCATCGGTCTCATCCTGCTGCGCAACCACCACCAGGGCAAACCCATTCCCTTTGGCCCCTA
TCTCGCCATCGCGGGCTGGATAACGCTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTTGATGTCGTGCTCTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (140-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

3D structure

• AlphaFold DB: A0A6S4T239

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.417	98.969	0.598
pilD	Vibrio campbellii strain DS40M4	56.897	99.656	0.567
pilD	Acinetobacter baumannii D1279779	51.971	95.876	0.498
pilD	Acinetobacter nosocomialis M2	51.971	95.876	0.498
pilD	Neisseria gonorrhoeae MS11	51.341	89.691	0.46