Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   I6L30_RS14300 Genome accession   NZ_CP077365
Coordinates   3005285..3009805 (+) Length   1506 a.a.
NCBI ID   WP_216984570.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain FDAARGOS 1400     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 3000285..3014805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L30_RS14275 (I6L30_14275) - 3000724..3001362 (-) 639 WP_039253235.1 hypothetical protein -
  I6L30_RS14280 (I6L30_14280) pilG 3001646..3002029 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  I6L30_RS14285 (I6L30_14285) - 3002053..3002415 (+) 363 WP_004705774.1 PleD family two-component system response regulator -
  I6L30_RS14290 (I6L30_14290) - 3002473..3003009 (+) 537 WP_004705775.1 chemotaxis protein CheW -
  I6L30_RS14295 (I6L30_14295) - 3003056..3005137 (+) 2082 WP_151750186.1 methyl-accepting chemotaxis protein -
  I6L30_RS14300 (I6L30_14300) chpA 3005285..3009805 (+) 4521 WP_216984570.1 hybrid sensor histidine kinase/response regulator Regulator
  I6L30_RS14305 (I6L30_14305) - 3009802..3010269 (+) 468 WP_216984571.1 hypothetical protein -
  I6L30_RS14310 (I6L30_14310) - 3010471..3011862 (+) 1392 WP_216984572.1 coproporphyrinogen-III oxidase family protein -
  I6L30_RS14315 (I6L30_14315) - 3011870..3012751 (+) 882 WP_216984573.1 alpha/beta fold hydrolase -
  I6L30_RS14320 (I6L30_14320) dapE 3012888..3014021 (-) 1134 WP_174742237.1 succinyl-diaminopimelate desuccinylase -
  I6L30_RS14325 (I6L30_14325) - 3014147..3014290 (-) 144 WP_002051109.1 entericidin A/B family lipoprotein -

Sequence


Protein


Download         Length: 1506 a.a.        Molecular weight: 171326.90 Da        Isoelectric Point: 4.3749

>NTDB_id=580943 I6L30_RS14300 WP_216984570.1 3005285..3009805(+) (chpA) [Acinetobacter seifertii strain FDAARGOS 1400]
MKEILKTLTEAMTLPEDSYSEQDAEFLEIFVEEIDEIFVDLQPLLNEWMQSANTATLTEIRRHFHTLKGSGRMIGAKSSA
ELAWTVEDTLNRVINQSLKLTPAIQGYVQLVFKFYFLKLVDNFKQKRAHAVDFRPLILLGQQLQQQQSLEPALEELLQLS
NTLTAETTTGLELDYIEQDLLAEPIVEDVHTEIEINLNETLALFMEEAEEHLSTINQFLNQELHQYDSYNALIRALHTLR
GSSAMAQVETIFEASTKVEHLFKILLQEELSSNSDEILLLQEYREFIGESLELLSSNSSSEQLEARLAQFNQSWDAYVEQ
HGDRTDPLMPSHGLVSQLLLLDVSELLDAELDFEKGIRNEFPGYLERLSEQADLLLQHTHSQAMLGLHEYTSQLKDSYNV
LLDKPVLLQSDYIFEIYQKAHQQLIQLFDALAAGQRVGIVKQHQSILEELKLYTLHTPSIQNDLPHQNFTFDEPLFNTEL
EPEVITVENLSDSADWTVLSQSVQQDRQYISSVQVNRNFDPDLLDIFLEEADELLEGIDTDLNIWVGEQENFAALNNLMR
YLHTLKGGANMVQATYIGSITHELESIYERLIQKQLIATSPLIDFIRLIQDDLADRLQIMREKQLDYAAPYTINALKQAG
KNSNFQLVPEVEVFDTESEIFSEQEVVSQVLINEVPAETEVVVDELEAHHDQVFDTVVTELATPVEVITSVESSQENEAV
VDEEDITVVVEQTFLEEAAELLEMADVLLKQWFDQRTNRSILLQLQRAVHSLKGGARMVGLEAVYAIAYQLENTFEQFAL
HHFNSNIYDHLLESAIAWLKDAIFKHNYQHFDGLQQSLENIQFFETNIQIPAKLTKADLFSSEPVMTFIQGDGTEPPPMM
GVWEQTERLDQNNEMIRVSADLIEKMIDLSGENSINRSRIEMDLSQFGHTLVEMELAIQRLADQLRRMEGELETQIIAKH
GIEHSRYTDFDPLEMDQYSSLNQLSKSLAESASDLVDFKNTLSHKIRDTESLLLQQSRIQAEIQEGLMRTRLVPFSRLLP
RLQRIVRQTSTALNRPAELFVNNTEGELDRNILERLVTPLEHMLRNAIDHGLEGRTQRQQANKPETGRIELNIQRQGTDV
VVVFSDDGQGIDVEKVRQKALLAGLIKPEQHLEHQDILQLIFHPGLSTADQITQISGRGVGLDVVQSDIKALGGHVSVDS
VYGKGTTFTIRVPTTVAVSDALMVKVADQQFAIPLAQIDRIVRVSPASLEQYFESPKELFEYENKRYPLRYLSEFVGNQP
IPRLNGMMYSLPVLMIKANNGQTVALLVDQLIGSRAQIVVKPIGQQFASIGAIAGATILGDGQVCLILDGQNIARQIQST
PRHKQLGEAVYRQRESDERRLVMIVDDSVTVRKVTSRLLERQGYDVVTAKDGVDAIEQLENIKPDLMLLDIEMPRMDGFE
VLNLVRHHDMHQYMPIIMITSRTGEKHRERAFSLGVSQYMGKPFQEEELLENIDALLVAFESEVKS

Nucleotide


Download         Length: 4521 bp        

>NTDB_id=580943 I6L30_RS14300 WP_216984570.1 3005285..3009805(+) (chpA) [Acinetobacter seifertii strain FDAARGOS 1400]
ATGAAAGAAATATTAAAAACTTTAACTGAAGCAATGACTCTACCTGAAGATAGCTATTCTGAACAAGATGCTGAGTTTCT
TGAGATTTTTGTCGAAGAAATTGATGAAATTTTTGTTGATTTGCAGCCATTGTTGAATGAATGGATGCAGTCTGCAAATA
CTGCTACGCTCACTGAAATTCGCCGCCATTTTCATACCTTAAAAGGTTCGGGGAGAATGATTGGTGCTAAATCTTCGGCC
GAGCTTGCTTGGACAGTTGAAGATACGCTCAATCGAGTAATCAATCAAAGCCTTAAGCTGACTCCAGCTATTCAAGGCTA
TGTTCAGTTAGTGTTTAAGTTCTATTTCCTTAAATTAGTAGATAACTTTAAGCAAAAACGAGCACATGCAGTAGATTTTA
GACCGCTTATTTTATTAGGCCAACAACTACAACAACAGCAAAGTTTAGAACCTGCTTTAGAAGAGCTTTTACAACTTTCA
AATACGCTTACTGCCGAAACAACCACTGGGCTTGAGCTAGACTATATTGAGCAAGATTTATTGGCTGAGCCAATTGTTGA
AGATGTACATACTGAAATTGAAATAAATCTAAATGAAACTTTAGCCTTGTTTATGGAAGAGGCGGAAGAGCATTTATCGA
CAATTAACCAGTTCTTAAATCAAGAACTACATCAGTATGATAGCTACAATGCTTTAATACGTGCTCTACATACTTTGCGT
GGCAGTTCTGCAATGGCGCAGGTCGAAACAATTTTTGAAGCCAGTACTAAAGTTGAGCACTTATTTAAAATCTTATTGCA
AGAGGAGCTTTCTTCTAATTCAGATGAGATTTTATTATTACAAGAATATCGTGAGTTTATTGGCGAGAGCTTAGAACTGC
TATCTAGCAATAGTTCAAGTGAACAGCTTGAAGCGAGATTGGCGCAGTTTAATCAATCATGGGATGCCTACGTGGAGCAA
CATGGTGATCGAACTGATCCATTAATGCCTTCACATGGTTTGGTGTCGCAATTATTGCTGCTAGATGTTTCTGAGTTACT
AGATGCAGAATTAGATTTTGAGAAAGGAATTCGTAACGAGTTTCCTGGTTATCTTGAACGTCTAAGTGAACAGGCTGATC
TGTTGCTACAGCATACTCACTCTCAAGCAATGCTTGGTTTGCATGAATATACGAGCCAATTGAAAGACAGCTATAATGTA
TTGCTTGATAAACCTGTCTTGTTGCAATCAGACTATATTTTTGAAATTTATCAGAAAGCGCATCAACAACTTATTCAATT
GTTCGATGCTTTAGCTGCTGGTCAGCGAGTCGGTATTGTTAAGCAACATCAAAGTATTCTAGAAGAATTAAAACTTTATA
CGTTACATACGCCGAGTATTCAAAACGATTTACCTCATCAGAATTTTACTTTTGATGAGCCACTATTCAATACTGAACTA
GAACCAGAAGTTATTACGGTAGAGAATTTATCAGATTCCGCCGATTGGACCGTATTAAGCCAGAGTGTACAGCAAGATCG
TCAGTATATTTCATCTGTACAGGTAAATCGAAACTTTGATCCTGACCTTTTGGACATTTTCCTTGAAGAAGCTGATGAGC
TACTTGAGGGGATTGATACTGATCTCAATATATGGGTAGGTGAGCAAGAAAACTTTGCAGCTCTGAACAACTTAATGCGC
TATTTGCATACCTTGAAAGGGGGAGCAAATATGGTTCAGGCGACTTATATCGGTTCGATTACCCATGAATTAGAAAGCAT
ATATGAACGTTTAATTCAAAAGCAGTTAATTGCAACCTCACCTCTAATTGATTTTATTCGTTTGATTCAAGATGACTTGG
CTGATCGTCTACAAATCATGCGTGAAAAACAGCTAGATTATGCGGCTCCTTACACAATTAATGCGTTAAAACAAGCGGGT
AAAAACTCTAACTTCCAGCTTGTGCCTGAGGTTGAAGTATTTGATACTGAAAGTGAGATATTCTCTGAACAAGAGGTGGT
GTCTCAAGTATTAATAAATGAGGTACCAGCGGAAACAGAAGTTGTTGTTGACGAATTAGAAGCTCATCACGATCAAGTAT
TTGATACCGTTGTTACTGAATTGGCTACGCCAGTTGAAGTAATAACATCAGTTGAATCCTCGCAAGAGAATGAAGCTGTA
GTTGACGAAGAAGATATTACCGTTGTTGTTGAGCAGACATTCCTAGAAGAAGCTGCTGAATTGTTAGAAATGGCTGATGT
GCTATTGAAACAATGGTTTGATCAGCGTACGAACCGTAGTATCTTGCTTCAGTTACAAAGAGCCGTGCACAGTTTGAAGG
GTGGTGCACGCATGGTCGGTTTAGAGGCCGTGTATGCAATTGCTTATCAACTGGAAAATACTTTTGAACAGTTTGCACTG
CATCACTTCAACTCGAATATTTATGACCATCTGCTCGAAAGTGCAATTGCATGGCTAAAAGATGCAATTTTCAAGCACAA
CTACCAGCATTTCGATGGACTACAACAAAGTTTAGAAAATATTCAATTCTTTGAAACCAATATCCAAATTCCAGCGAAGT
TAACAAAAGCTGATTTGTTTAGCTCAGAACCTGTGATGACCTTTATACAAGGTGATGGTACCGAACCACCACCAATGATG
GGAGTATGGGAGCAAACAGAACGTCTGGATCAAAATAATGAAATGATCCGAGTTTCAGCAGACTTAATTGAGAAGATGAT
TGATTTATCTGGTGAAAATTCGATTAACCGTTCGCGAATTGAAATGGATCTAAGTCAGTTTGGTCATACATTGGTTGAAA
TGGAATTGGCTATTCAACGACTTGCCGATCAGTTACGTCGAATGGAAGGCGAGTTAGAAACACAAATTATTGCCAAACAT
GGTATTGAGCATTCTCGTTATACCGACTTTGACCCTTTAGAGATGGACCAATATTCATCTTTAAATCAGTTATCGAAATC
TCTTGCTGAATCTGCATCGGACTTAGTCGACTTTAAAAATACGTTGTCTCACAAGATCAGAGATACAGAAAGTCTGCTTT
TACAACAGTCACGAATTCAAGCAGAAATTCAAGAAGGTTTGATGCGAACACGATTAGTTCCTTTTTCACGGTTACTACCG
CGTTTACAGCGAATTGTTCGTCAGACCTCTACTGCGTTGAACAGACCTGCTGAGCTTTTTGTAAATAATACTGAAGGTGA
ACTAGACCGTAATATTTTAGAGCGTTTAGTAACACCGCTTGAGCATATGCTCAGAAACGCAATTGACCATGGCTTAGAAG
GCAGAACACAACGTCAGCAAGCTAATAAACCTGAAACTGGGCGTATTGAACTTAATATTCAACGTCAAGGTACAGATGTG
GTCGTTGTCTTTAGTGATGATGGACAGGGTATTGATGTAGAAAAAGTGCGTCAAAAAGCACTGCTTGCGGGTCTGATCAA
ACCGGAACAGCACTTGGAACACCAAGATATTTTACAACTGATTTTCCATCCAGGTTTAAGTACCGCAGATCAGATCACTC
AAATCTCTGGGCGTGGTGTTGGACTCGATGTTGTACAAAGCGACATTAAGGCTCTAGGTGGACATGTTAGCGTAGACTCT
GTTTATGGTAAGGGAACAACATTTACTATTCGTGTACCGACTACGGTAGCTGTAAGTGATGCCTTAATGGTGAAAGTGGC
AGATCAGCAATTTGCGATTCCACTTGCTCAAATCGATCGAATTGTTCGAGTTTCACCAGCTTCTTTAGAACAGTATTTTG
AAAGCCCTAAAGAACTATTCGAGTATGAAAATAAACGTTATCCATTACGTTATCTTTCAGAATTTGTGGGTAATCAACCA
ATACCACGTCTAAATGGCATGATGTATTCATTACCTGTCTTAATGATTAAAGCCAACAATGGCCAAACTGTGGCTTTACT
TGTTGACCAGTTAATTGGTTCTCGAGCACAAATTGTAGTGAAACCAATTGGCCAACAGTTCGCTAGCATTGGGGCAATTG
CAGGTGCGACTATTTTAGGTGATGGACAAGTTTGCTTAATTTTAGACGGACAAAATATTGCGCGACAAATTCAGTCTACT
CCGCGTCATAAACAGCTTGGTGAAGCAGTATATAGACAACGAGAATCTGACGAGCGCCGTCTCGTTATGATTGTCGATGA
CTCGGTAACTGTACGTAAGGTAACGTCTCGATTACTTGAACGCCAAGGCTACGATGTTGTTACGGCCAAAGATGGTGTGG
ATGCCATAGAGCAGCTAGAAAACATCAAGCCAGATCTAATGCTGCTTGATATTGAAATGCCGCGTATGGATGGTTTCGAA
GTACTGAATCTTGTACGACATCATGATATGCATCAATACATGCCAATTATTATGATTACATCCAGAACAGGTGAAAAACA
TCGAGAACGAGCATTCTCGTTAGGTGTAAGTCAATATATGGGTAAACCTTTCCAAGAGGAAGAATTACTAGAGAATATCG
ATGCTTTACTTGTAGCGTTTGAAAGTGAGGTCAAATCATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

91.374

100

0.914