Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   I6L23_RS08050 Genome accession   NZ_CP077336
Coordinates   1733046..1734470 (-) Length   474 a.a.
NCBI ID   WP_004644917.1    Uniprot ID   N8Q709
Organism   Acinetobacter lwoffii strain FDAARGOS 1393     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1728046..1739470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L23_RS08035 (I6L23_08035) lptG 1729099..1730169 (+) 1071 WP_004281054.1 LPS export ABC transporter permease LptG -
  I6L23_RS08040 (I6L23_08040) gpmI 1730294..1731841 (+) 1548 WP_004644915.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  I6L23_RS08045 (I6L23_08045) - 1731873..1733045 (+) 1173 WP_004644916.1 S41 family peptidase -
  I6L23_RS08050 (I6L23_08050) pilR 1733046..1734470 (-) 1425 WP_004644917.1 sigma-54-dependent transcriptional regulator Regulator
  I6L23_RS08055 (I6L23_08055) pilS 1734485..1736050 (-) 1566 WP_004644918.1 sensor histidine kinase Regulator
  I6L23_RS08060 (I6L23_08060) - 1736073..1736708 (-) 636 WP_004281059.1 response regulator transcription factor GacA -
  I6L23_RS08065 (I6L23_08065) - 1736928..1737989 (+) 1062 WP_004281060.1 serine hydrolase -
  I6L23_RS08070 (I6L23_08070) thrC 1738047..1739186 (-) 1140 WP_004281061.1 threonine synthase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 53537.67 Da        Isoelectric Point: 6.0366

>NTDB_id=580859 I6L23_RS08050 WP_004644917.1 1733046..1734470(-) (pilR) [Acinetobacter lwoffii strain FDAARGOS 1393]
MNGEQQPLVLLVDDEEDLCTLMQMSLLRMGIRTHIAHRLEDAKKCLANHQYDACLTDLNLPDGNGLELLDWISNLYPALP
VAVLTAYGNMEIAIAALKAGAFDFVSKPINQKHLEQLLQKALNKPVDYSHNNPNDALEHKMLIGQSMPIQQLRITLQKIA
RSQAPVFITGESGTGKEVVANLVHRLSNRNEGPFIAINCGAIPTELMESELFGHKKGSFTGAAQDKQGLIQSAHGGSLFL
DEIAELPLSMQVKLLRAVQEKRIRPLGSDTEIDVDFRVISATHQDLEALVQQGKFRQDLYFRIHVMDLTLPPLRERGQDI
LLLAEHFIQKICQEWGIPNKKPTERSKEFLLGQYYPGNVRELRNIMERAITLSDEERIDLQHLQSAPLRQALNSPQEMNT
LTSEIIATETLIAPKKLPEEGLELYLEKVEKEILLNALNLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTEEDE

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=580859 I6L23_RS08050 WP_004644917.1 1733046..1734470(-) (pilR) [Acinetobacter lwoffii strain FDAARGOS 1393]
ATGAATGGGGAACAACAACCACTGGTGCTCTTGGTGGATGATGAGGAGGATTTATGTACCCTCATGCAAATGTCATTGCT
GCGCATGGGAATTCGCACGCACATTGCCCATCGTTTGGAAGACGCTAAAAAATGCCTTGCCAATCATCAATATGATGCCT
GTCTGACCGACCTGAATCTGCCCGATGGCAATGGTTTGGAGCTTCTGGACTGGATTAGCAACCTCTATCCGGCACTTCCG
GTCGCGGTTCTGACCGCCTATGGCAACATGGAAATCGCCATTGCCGCGCTCAAAGCCGGGGCCTTTGACTTTGTCAGTAA
ACCGATTAATCAGAAACATCTGGAACAGCTCTTACAAAAAGCCCTGAATAAACCGGTGGATTATTCGCATAATAATCCGA
ATGATGCACTCGAACATAAAATGCTGATTGGACAATCCATGCCAATTCAGCAATTACGCATTACCTTACAAAAAATTGCC
CGCTCACAAGCACCGGTTTTTATCACAGGTGAATCAGGTACAGGTAAAGAAGTCGTGGCCAATCTGGTCCATCGCTTGAG
TAACCGCAATGAAGGTCCTTTTATTGCGATTAATTGTGGTGCCATTCCGACTGAATTGATGGAAAGCGAACTGTTTGGAC
ATAAAAAAGGCAGCTTTACCGGCGCTGCTCAGGACAAACAGGGCCTGATTCAATCTGCACATGGTGGCAGTCTGTTTCTG
GATGAAATTGCAGAATTACCGCTTTCCATGCAGGTCAAACTGTTACGTGCCGTTCAGGAAAAACGTATTCGTCCACTCGG
TTCAGATACCGAAATTGATGTGGATTTCCGCGTGATCAGTGCTACCCATCAGGATCTGGAAGCCTTGGTGCAACAAGGCA
AATTCCGCCAGGATCTATATTTCCGTATTCATGTAATGGATCTGACTTTACCGCCGCTGCGTGAACGCGGTCAGGATATT
CTGTTATTGGCTGAACACTTTATTCAGAAAATTTGCCAGGAATGGGGCATTCCCAATAAAAAACCGACCGAACGCAGCAA
AGAGTTTTTATTGGGACAATATTATCCAGGTAATGTGCGTGAATTACGCAATATTATGGAACGTGCGATTACTTTAAGTG
ATGAAGAGCGGATTGATCTTCAGCATTTGCAGAGCGCACCGCTGCGTCAGGCGCTAAACAGCCCTCAGGAGATGAATACG
CTCACGAGCGAGATCATTGCCACCGAGACCCTGATTGCACCTAAAAAGCTGCCTGAAGAGGGTCTAGAGCTGTATTTGGA
AAAGGTCGAGAAAGAAATTTTACTCAATGCGCTGAATCTGACCCATTGGAACCGGACACTGGCCGCCAAAAAACTCGGCA
TGTCGTTCCGTTCCCTGCGCTATCGCTTGAAAAAGTTCGGACTGGATACCGAAGAAGACGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(426-466)

Sigma-54 interaction domain (Sigma54_activat)

(142-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8Q709

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

74.051

100

0.741
  pilR Pseudomonas aeruginosa PAK

49.024

97.257

0.477