Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6L67_RS07675 Genome accession   NZ_CP077320
Coordinates   1619267..1619779 (+) Length   170 a.a.
NCBI ID   WP_060789733.1    Uniprot ID   -
Organism   Enterococcus durans strain FDAARGOS 1437     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1614267..1624779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L67_RS07665 (I6L67_07665) gyrA 1616096..1618597 (+) 2502 WP_016177139.1 DNA gyrase subunit A -
  I6L67_RS07670 (I6L67_07670) rpsF 1618918..1619217 (+) 300 WP_005875806.1 30S ribosomal protein S6 -
  I6L67_RS07675 (I6L67_07675) ssb 1619267..1619779 (+) 513 WP_060789733.1 single-stranded DNA-binding protein Machinery gene
  I6L67_RS07680 (I6L67_07680) rpsR 1619805..1620041 (+) 237 WP_005875810.1 30S ribosomal protein S18 -
  I6L67_RS07685 (I6L67_07685) - 1620290..1622263 (+) 1974 WP_016177140.1 DHH family phosphoesterase -
  I6L67_RS07690 (I6L67_07690) rplI 1622269..1622721 (+) 453 WP_005875813.1 50S ribosomal protein L9 -
  I6L67_RS07695 (I6L67_07695) dnaB 1623351..1624718 (+) 1368 WP_005875816.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18640.17 Da        Isoelectric Point: 4.6856

>NTDB_id=580806 I6L67_RS07675 WP_060789733.1 1619267..1619779(+) (ssb) [Enterococcus durans strain FDAARGOS 1437]
MINNVVLVGRLTKDPDLRYTSSGTAVATFTLAVNRNFTSQNGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQLLESRSASENRQQSVGSQSSGQSANNFGGSNNYNQTSQSSNGMPDFDRDNSDPFGSSST
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=580806 I6L67_RS07675 WP_060789733.1 1619267..1619779(+) (ssb) [Enterococcus durans strain FDAARGOS 1437]
TTGATTAATAATGTTGTACTAGTTGGACGTCTAACGAAAGATCCAGATTTACGATATACATCAAGTGGCACTGCAGTTGC
AACGTTCACTTTAGCTGTCAATCGTAATTTTACTAGCCAAAACGGCAATCGTGAGGCTGACTTTATCAACTGTGTGATTT
GGCGTAAATCAGCAGAAACATTAGCAAACTATGCTCGCAAAGGTACCCTTTTAGGTGTTACCGGACGTATCCAAACTCGT
TCTTATGATAATCAACAAGGACAACGTGTATATGTAACAGAAGTAGTTGCTGAAAATTTCCAATTATTGGAAAGTCGTTC
TGCATCTGAAAATCGTCAACAAAGCGTCGGTTCTCAAAGTTCTGGTCAATCGGCAAATAATTTTGGCGGAAGTAATAACT
ATAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTTGATCGTGACAATTCTGATCCATTTGGCTCAAGTTCAACG
ATCGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.234

100

0.606
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.425

100

0.594
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.353

0.376