Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   STO1_RS04520 Genome accession   NZ_AP018338
Coordinates   890050..892038 (+) Length   662 a.a.
NCBI ID   WP_084873165.1    Uniprot ID   A0A3R8LVX9
Organism   Streptococcus oralis subsp. tigurinus strain osk_001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 885050..897038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STO1_RS04505 (STO1_008710) zwf 885328..886815 (-) 1488 WP_096422136.1 glucose-6-phosphate dehydrogenase -
  STO1_RS04510 (STO1_008720) - 886964..887704 (-) 741 WP_096422138.1 amino acid ABC transporter ATP-binding protein -
  STO1_RS04515 (STO1_008730) - 887704..889869 (-) 2166 WP_096422140.1 ABC transporter substrate-binding protein/permease -
  STO1_RS04520 (STO1_008740) uvrB 890050..892038 (+) 1989 WP_084873165.1 excinuclease ABC subunit UvrB Machinery gene
  STO1_RS04525 - 892101..892619 (+) 519 WP_096422142.1 hypothetical protein -
  STO1_RS04530 (STO1_008750) - 892785..893252 (+) 468 WP_096422144.1 8-oxo-dGTP diphosphatase -
  STO1_RS04535 (STO1_008760) - 893249..893764 (-) 516 WP_000205862.1 transcription repressor NadR -
  STO1_RS04540 (STO1_008770) - 893776..894303 (-) 528 WP_000354641.1 ECF transporter S component -
  STO1_RS04545 (STO1_008780) - 894479..895042 (-) 564 WP_061588203.1 ECF transporter S component -
  STO1_RS04550 (STO1_008790) coaC 895026..895577 (-) 552 WP_033606394.1 phosphopantothenoylcysteine decarboxylase -
  STO1_RS04555 (STO1_008800) coaB 895589..896278 (-) 690 WP_007522039.1 phosphopantothenate--cysteine ligase -

Sequence

Protein


Download         Length: 662 a.a.        Molecular weight: 75744.91 Da        Isoelectric Point: 4.6250

>NTDB_id=58071 STO1_RS04520 WP_084873165.1 890050..892038(+) (uvrB) [Streptococcus oralis subsp. tigurinus strain osk_001]
MINRITDNKFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISKVNKPTLVIAHNKTLAGQLYG
EFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYA
DSVVSLRPGLEISRDKLLNDLVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVL
GEVDHLAIFPATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIEMLREMGYTNGVENYSRHMDG
RSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYENEQTETVIEQIIRPTGLLDPEVEVRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYM
HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADT
MTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDLIAVTKAVAKEEDKEVDINSLNKQERKELVKKLEKQMQEAV
EVLDFELAAQIRDMMLEVKALG

Nucleotide


Download         Length: 1989 bp        

>NTDB_id=58071 STO1_RS04520 WP_084873165.1 890050..892038(+) (uvrB) [Streptococcus oralis subsp. tigurinus strain osk_001]
ATGATAAATCGAATTACAGATAATAAATTTAAACTAGTATCAAAATACCAACCTTCAGGAGATCAACCACAAGCGATTGA
GCAGTTGGTTGACAATATCGAGGGTGGAGAAAAGGCTCAGATTTTGATGGGGGCGACGGGTACAGGGAAGACCTACACCA
TGAGTCAGGTCATTTCCAAAGTCAATAAACCTACTTTGGTCATTGCCCATAACAAAACCCTAGCTGGTCAGCTCTACGGA
GAGTTTAAGGAATTTTTCCCTGAGAATGCTGTTGAGTACTTCGTATCCTACTATGATTATTATCAACCCGAGGCCTATGT
GCCTTCTAGTGATACCTACATTGAGAAGGATAGCTCGGTCAATGACGAGATTGATAAGCTCCGTCACTCAGCGACTTCAG
CCCTTCTGGAGCGCAATGATGTCATCGTTGTGGCTTCAGTCTCTTGTATCTATGGTTTGGGTTCGCCCAAGGAATACGCT
GATAGCGTGGTTAGTCTGCGTCCAGGTCTTGAGATTTCTCGTGATAAACTTTTGAATGACTTGGTCGATATTCAGTTTGA
ACGTAACGATATTGATTTCCAACGGGGAAGATTTCGTGTTCGTGGGGATGTGGTGGAGATTTTCCCAGCTTCCCGAGATG
AACACGCTTTTCGAGTAGAGTTTTTCGGGGATGAAATTGATCGTATCCGTGAAGTTGAGGCTTTGACAGGTCAGGTATTG
GGAGAAGTGGATCATTTGGCGATTTTCCCTGCCACTCACTTTGTGACCAATGATGACCACATGGAAGTTGCGATTGCGAA
AATTCAAGCAGAATTAGAAGAGCAGTTAGCCGTCTTTGAGAAGGAAGGCAAACTGCTAGAAGCCCAGCGTTTGAAACAGC
GAACAGAGTATGATATTGAGATGTTACGTGAGATGGGCTATACCAATGGTGTTGAAAACTACTCACGCCACATGGATGGT
CGTAGCGAAGGAGAGCCTCCTTATACGCTTCTTGACTTCTTCCCAGATGATTTCTTGATTATGATTGATGAAAGTCACAT
GACTATGGGGCAAATAAAGGGCATGTACAATGGTGACCGTTCTCGTAAGGAAATGTTAGTGAATTATGGTTTCCGCTTGC
CGTCTGCCTTGGACAATCGTCCCCTCCGTCGTGAAGAGTTTGAAAGCCATGTCCATCAGATTGTTTACGTTTCAGCGACA
CCAGGTGACTATGAAAATGAACAGACGGAGACAGTGATTGAGCAAATCATTCGTCCGACAGGGCTTCTAGACCCAGAGGT
GGAAGTTCGTCCGACTATGGGACAGATTGATGACCTCCTAGGTGAAATCAATGCCCGTGTTGAAAAGAACGAACGAACCT
TTATTACCACCTTGACTAAGAAAATGGCAGAAGACTTGACCGACTACTTCAAGGAAATGGGCATCAAAGTCAAGTACATG
CACTCGGACATCAAGACCTTGGAGCGGACGGAGATTATCCGTGACCTACGCTTGGGTGTCTTTGATGTTTTGGTTGGAAT
CAACCTGCTCCGCGAAGGGATTGACGTACCTGAAGTAAGTTTGGTTGCTATTCTAGATGCTGACAAGGAAGGCTTCCTTC
GTAACGAACGTGGCCTCATCCAGACCATTGGACGTGCTGCCCGTAATAGCGAAGGACATGTTATCATGTACGCTGATACC
ATGACTCAGTCTATGCAACGTGCCATAGATGAAACGGCCCGTCGTCGGAAAATCCAGATGGCTTATAATGAAGAACATGG
CATTGTACCTCAGACAATCAAGAAAGAAATTCGTGACTTGATTGCCGTGACCAAGGCAGTTGCTAAAGAAGAGGACAAGG
AAGTCGATATCAACAGCCTCAACAAACAAGAGCGTAAAGAACTCGTCAAGAAACTAGAAAAACAAATGCAAGAAGCCGTC
GAAGTGCTTGACTTTGAATTGGCGGCCCAGATTCGTGATATGATGCTGGAAGTCAAGGCGTTGGGGTAG

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(626-660)

Type III restriction enzyme, res subunit (ResIII)

(17-143)

Ultra-violet resistance protein B (UvrB)

(556-598)

Helicase conserved C-terminal domain (Helicase_C)

(443-549)

UvrB interaction domain (UvrB_inter)

(164-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R8LVX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

99.546

99.849

0.994
  uvrB Streptococcus pneumoniae D39

99.546

99.849

0.994
  uvrB Streptococcus pneumoniae TIGR4

99.395

99.849

0.992

Multiple sequence alignment