Detailed information NTG0580685

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I6L26_RS02340
• Genome accession: NZ_CP077303
• Coordinates: 480844..481704 (-)
• Length: 286 a.a.
• NCBI ID: WP_216978112.1
• Uniprot ID: -
• Organism: Acinetobacter pittii strain FDAARGOS 1396
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 475844..486704

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6L26_RS02315 (I6L26_02315)	-	476734..478044 (+)	1311	WP_216978111.1	tetratricopeptide repeat protein	-
I6L26_RS02320 (I6L26_02320)	-	478121..478447 (+)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
I6L26_RS02325 (I6L26_02325)	rlmB	478550..479299 (+)	750	WP_005079348.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
I6L26_RS02330 (I6L26_02330)	-	479335..480249 (+)	915	WP_002115017.1	DMT family transporter	-
I6L26_RS02335 (I6L26_02335)	coaE	480246..480842 (-)	597	WP_002115011.1	dephospho-CoA kinase	-
I6L26_RS02340 (I6L26_02340)	pilD	480844..481704 (-)	861	WP_216978112.1	prepilin peptidase	Machinery gene
I6L26_RS02345 (I6L26_02345)	pilC	481704..482930 (-)	1227	WP_002114869.1	type II secretion system F family protein	Machinery gene
I6L26_RS02350 (I6L26_02350)	pilB	482957..484669 (-)	1713	WP_005804145.1	type IV-A pilus assembly ATPase PilB	Machinery gene
I6L26_RS02355 (I6L26_02355)	tpiA	484961..485755 (+)	795	WP_002114826.1	triose-phosphate isomerase	-
I6L26_RS02360 (I6L26_02360)	secG	485768..486097 (+)	330	WP_002115012.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32183.67 Da
• Isoelectric Point: 7.1044

>NTDB_id=580685 I6L26_RS02340 WP_216978112.1 480844..481704(-) (pilD) [Acinetobacter pittii strain FDAARGOS 1396]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPELPIIEHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTQQMLWGLVLTWILIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=580685 I6L26_RS02340 WP_216978112.1 480844..481704(-) (pilD) [Acinetobacter pittii strain FDAARGOS 1396]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTCGCACTATTGAGCCTATGTATTGG
TAGCTTTTTGAATGTGGTAATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA
ATCCCGAACTACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCCATTGCCAACATCCTATTAG
CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCAACAAA
TGCTTTGGGGGCTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT
TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACCTTTAATATTTACACCTCGCCTAACTCAGCCATTTGGGG
ATATTTAATCGGCTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCCGCATTAGGCGCGTGGATGGGACCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTCGGTGCAATTATTGGCATCATTTTACTAAAATTACGTAATGATAATCAGCCCTTTGCGTTTGGGCCATATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	96.503	100	0.965
pilD	Acinetobacter nosocomialis M2	96.154	100	0.962
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	53.309	95.105	0.507
pilD	Neisseria gonorrhoeae MS11	47.71	91.608	0.437