Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   MUG61_RS26430 Genome accession   NZ_CP094851
Coordinates   5755481..5756077 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain R20-14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5750481..5761077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUG61_RS26410 (MUG61_26405) aroK 5751612..5752130 (-) 519 WP_003095833.1 shikimate kinase AroK -
  MUG61_RS26415 (MUG61_26410) pilQ 5752142..5754286 (-) 2145 WP_003123619.1 type 4a pilus secretin PilQ Machinery gene
  MUG61_RS26420 (MUG61_26415) comL/pilP 5754340..5754864 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  MUG61_RS26425 (MUG61_26420) pilO 5754861..5755484 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  MUG61_RS26430 (MUG61_26425) pilN 5755481..5756077 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  MUG61_RS26435 (MUG61_26430) pilM 5756077..5757141 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  MUG61_RS26440 (MUG61_26435) - 5757326..5759797 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=580686 MUG61_RS26430 WP_003095839.1 5755481..5756077(-) (pilN) [Pseudomonas aeruginosa strain R20-14]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=580686 MUG61_RS26430 WP_003095839.1 5755481..5756077(-) (pilN) [Pseudomonas aeruginosa strain R20-14]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTTAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369