Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   MUG61_RS26420 Genome accession   NZ_CP094851
Coordinates   5754340..5754864 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain R20-14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5749340..5759864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUG61_RS26405 (MUG61_26400) aroB 5750456..5751562 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  MUG61_RS26410 (MUG61_26405) aroK 5751612..5752130 (-) 519 WP_003095833.1 shikimate kinase AroK -
  MUG61_RS26415 (MUG61_26410) pilQ 5752142..5754286 (-) 2145 WP_003123619.1 type 4a pilus secretin PilQ Machinery gene
  MUG61_RS26420 (MUG61_26415) comL/pilP 5754340..5754864 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  MUG61_RS26425 (MUG61_26420) pilO 5754861..5755484 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  MUG61_RS26430 (MUG61_26425) pilN 5755481..5756077 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  MUG61_RS26435 (MUG61_26430) pilM 5756077..5757141 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  MUG61_RS26440 (MUG61_26435) - 5757326..5759797 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=580684 MUG61_RS26420 WP_003095836.1 5754340..5754864(-) (comL/pilP) [Pseudomonas aeruginosa strain R20-14]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=580684 MUG61_RS26420 WP_003095836.1 5754340..5754864(-) (comL/pilP) [Pseudomonas aeruginosa strain R20-14]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCTGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362