Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   I6L85_RS06905 Genome accession   NZ_CP077248
Coordinates   1395017..1396021 (-) Length   334 a.a.
NCBI ID   WP_111723476.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1455     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1390017..1401021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L85_RS10595 - 1391456..1391827 (-) 372 WP_111724283.1 hypothetical protein -
  I6L85_RS06890 (I6L85_06890) - 1392161..1392523 (-) 363 WP_111723478.1 hypothetical protein -
  I6L85_RS06895 (I6L85_06895) - 1392559..1393872 (-) 1314 WP_111723477.1 glycosyltransferase family 4 protein -
  I6L85_RS06900 (I6L85_06900) - 1393874..1394872 (-) 999 WP_008809010.1 glycosyltransferase family 4 protein -
  I6L85_RS06905 (I6L85_06905) ccpA 1395017..1396021 (-) 1005 WP_111723476.1 catabolite control protein A Regulator
  I6L85_RS06910 (I6L85_06910) - 1396186..1397268 (+) 1083 WP_111723475.1 Xaa-Pro peptidase family protein -
  I6L85_RS10600 - 1397321..1397428 (-) 108 Protein_1336 DNA-entry nuclease -
  I6L85_RS06915 (I6L85_06915) - 1397721..1398767 (+) 1047 WP_111723474.1 iron ABC transporter permease -
  I6L85_RS06920 (I6L85_06920) - 1398769..1399524 (+) 756 WP_111723473.1 ABC transporter ATP-binding protein -
  I6L85_RS06925 (I6L85_06925) - 1399669..1400697 (+) 1029 WP_111723472.1 ABC transporter substrate-binding protein -

Sequence


Protein


Download         Length: 334 a.a.        Molecular weight: 37137.21 Da        Isoelectric Point: 6.8837

>NTDB_id=580280 I6L85_RS06905 WP_111723476.1 1395017..1396021(-) (ccpA) [Streptococcus gordonii strain FDAARGOS 1455]
MNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPSITNSYFS
TLAKGIDDIAEMYKYNIVLANSDEDDDKEVSVVNTLFSKQVDGIIFMGYHLTEKIRSEFSRSRTPVVLAGTIDVEHQLPS
VNIDYKQATIDAITFLAKRNKKIAFVCGPLVDDINGKVRLSGYKSTLKSKKLSYSEGLVFESKYSYDDGYNLAERVIASK
ATSAFVTGDELAAGLLNGLADRGVKIPEDFEIITSDDSQISRYTRPNLSTISQPLYDLGAISMRMLTKIMHKEELEEREV
VLSHGIYERNSTRK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=580280 I6L85_RS06905 WP_111723476.1 1395017..1396021(-) (ccpA) [Streptococcus gordonii strain FDAARGOS 1455]
ATGAACACAGACGATACAGTAACCATTTATGATGTCGCCCGTGAAGCAGGGGTTTCTATGGCGACAGTTAGTCGTGTAGT
TAATGGAAACAAGAATGTAAAAGAAAACACTCGGAAAAAAGTTTTGGAAGTAATTGATCGCCTTGATTATCGTCCAAATG
CAGTAGCTCGTGGTTTGGCTAGCAAGAAGACTACGACAGTTGGTGTTGTGATTCCAAGTATTACAAATAGTTATTTCTCA
ACACTCGCCAAGGGAATTGATGATATTGCTGAGATGTATAAATACAATATCGTCCTAGCAAATAGTGACGAGGATGATGA
TAAGGAAGTTTCAGTTGTAAACACTCTCTTTTCGAAACAAGTAGATGGTATTATCTTTATGGGTTACCACCTTACTGAAA
AGATTCGTTCAGAATTTTCACGCTCACGCACGCCAGTTGTCTTGGCTGGAACTATTGATGTGGAGCACCAATTGCCAAGT
GTTAATATAGATTATAAACAGGCTACGATTGACGCTATCACATTCCTTGCTAAGCGTAATAAAAAAATTGCTTTTGTATG
CGGACCTTTAGTTGATGATATCAATGGAAAAGTACGCTTATCCGGTTATAAATCGACTCTTAAGAGCAAAAAGCTGTCAT
ACAGCGAAGGTCTTGTTTTTGAGTCTAAGTATAGCTATGACGATGGCTATAATTTAGCTGAACGAGTAATTGCTTCTAAA
GCAACGTCTGCTTTTGTTACAGGTGATGAGCTGGCAGCTGGTCTTTTAAACGGACTAGCTGATCGCGGAGTAAAAATTCC
AGAGGATTTTGAAATTATTACTAGCGATGATTCACAGATATCTCGCTATACACGTCCAAATTTGTCAACTATCAGCCAGC
CTTTATATGATTTAGGTGCTATTAGTATGCGTATGCTGACTAAGATTATGCACAAAGAAGAGTTGGAAGAACGTGAAGTT
GTTCTGTCTCATGGTATTTACGAACGTAACTCAACTAGAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

98.503

100

0.985

  ccpA Streptococcus pneumoniae D39

87.126

100

0.871

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

57.1

99.102

0.566