Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   I6L85_RS02440 Genome accession   NZ_CP077248
Coordinates   473708..475204 (+) Length   498 a.a.
NCBI ID   WP_008809624.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1455     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 468708..480204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L85_RS02430 (I6L85_02430) amiA 469393..471375 (+) 1983 WP_111724041.1 peptide ABC transporter substrate-binding protein Regulator
  I6L85_RS02435 (I6L85_02435) amiA 471652..473643 (+) 1992 WP_061582792.1 peptide ABC transporter substrate-binding protein Regulator
  I6L85_RS02440 (I6L85_02440) amiC 473708..475204 (+) 1497 WP_008809624.1 ABC transporter permease Regulator
  I6L85_RS02445 (I6L85_02445) amiD 475204..476130 (+) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator
  I6L85_RS02450 (I6L85_02450) amiE 476139..477206 (+) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  I6L85_RS02455 (I6L85_02455) amiF 477217..478140 (+) 924 WP_012130756.1 ATP-binding cassette domain-containing protein Regulator
  I6L85_RS02460 (I6L85_02460) comR/comR2 478342..478824 (+) 483 WP_045772576.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55567.53 Da        Isoelectric Point: 9.9197

>NTDB_id=580260 I6L85_RS02440 WP_008809624.1 473708..475204(+) (amiC) [Streptococcus gordonii strain FDAARGOS 1455]
MKKYIFMRILRSLVSIFLVTALTYTIIYTMVPRKLIFKQDPNYNKIATTKDKKANYENTIYERMGYVDYYDTKELQEKAS
KEDSSVTVEGTDANKKIYEAYIKKLGNGWKLHQFEESKQFYAVREVPVLERVLGFYGNLIQFDHTGFVKDETNPKLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNAQFPFVHQNFVTLNLGNSYPTYANIPVLQVISQGQGQTKSSEVQFPTGKKTSSV
NIYSRTYKSPSKADSRDIANYGKDDPYTATESNYQYPSMLVSSAIIGLIGIAISYLIAVPLGSYMARFKNTWIDSSLTGL
LTFLLALPTIALVYIIRLGGSSVGLPDSFPVLGAGDWRSYVLPAVILGLLGAPSTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIQGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTGLSVFALLLGD
ILMTMLDPRIKLTTKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=580260 I6L85_RS02440 WP_008809624.1 473708..475204(+) (amiC) [Streptococcus gordonii strain FDAARGOS 1455]
ATGAAGAAATATATATTTATGCGTATCTTACGCTCCCTGGTGTCGATTTTCTTAGTAACGGCTTTGACCTATACCATTAT
TTATACTATGGTGCCAAGAAAATTGATTTTTAAACAGGACCCTAACTATAACAAGATAGCAACCACAAAAGATAAAAAAG
CCAATTACGAAAACACAATCTATGAACGTATGGGCTATGTGGATTATTATGATACGAAAGAGTTACAGGAGAAAGCTAGC
AAGGAAGATAGCTCTGTAACTGTTGAAGGAACTGATGCAAACAAAAAAATCTACGAAGCTTATATCAAAAAATTAGGTAA
TGGCTGGAAGCTTCACCAATTTGAAGAAAGCAAGCAGTTTTATGCTGTTCGTGAGGTGCCAGTTCTGGAACGTGTTCTTG
GCTTCTACGGGAATTTGATTCAATTTGACCATACTGGTTTTGTCAAAGATGAAACGAATCCAAAACTTAAACGTTATATT
CGTATTGAAAACGACCCTGCTATTGGTTGGTCTGTAGTTGGATCAGGGACTAAGCATAAATATTTACTATACTTTAATGC
TCAATTTCCGTTTGTTCATCAAAATTTTGTGACCTTGAACTTAGGAAATTCTTACCCAACTTATGCAAATATTCCTGTGT
TACAGGTTATTTCACAAGGGCAAGGACAAACTAAATCATCTGAGGTTCAATTCCCTACAGGAAAGAAAACTTCATCAGTT
AATATCTATTCACGTACTTACAAGTCACCAAGTAAAGCTGATTCGCGAGATATTGCAAACTATGGAAAAGATGATCCATA
TACAGCTACAGAGAGCAACTATCAATATCCATCCATGCTTGTTAGCTCAGCAATTATTGGTTTGATTGGTATTGCGATCT
CTTATCTGATTGCTGTCCCATTAGGATCTTACATGGCTCGCTTCAAAAACACTTGGATTGATAGTTCATTAACAGGTCTC
TTGACCTTCCTTTTGGCCCTGCCAACAATTGCCTTAGTTTATATTATTCGCTTAGGTGGTTCTTCGGTTGGTCTTCCAGA
TTCTTTCCCAGTTCTTGGTGCAGGAGACTGGCGTTCGTATGTTCTTCCGGCAGTTATTCTGGGACTTTTGGGGGCGCCAA
GCACAGCTATCTGGATTCGTCGTTATATGATCGACTTGCAATCCCAAGACTTTGTACGTTTTGCCCGGGCTAAAGGATTA
TCTGAAAAAGAAATTTCAAATAAACACATTTTCAAAAATGCCATGGTTCCATTGGTATCAGGAATTCCAGGAGCCGTTAT
CGGAGTTATTCAAGGGGCAACCTTGACAGAGACTGTCTTCGCCTTCCCTGGTATGGGTAAAATGTTGATCGACTCAGTTA
AAGCTTCAAATAATTCTATGGTAGTCGGATTGGTCTTCATTTTCACTGGTTTATCAGTCTTTGCCTTACTCTTAGGTGAT
ATTTTGATGACAATGCTTGACCCACGTATTAAATTAACAACAAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

79.116

100

0.791
  amiC Streptococcus thermophilus LMG 18311

78.514

100

0.785
  amiC Streptococcus thermophilus LMD-9

78.313

100

0.783