Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   I6L85_RS02455 Genome accession   NZ_CP077248
Coordinates   477217..478140 (+) Length   307 a.a.
NCBI ID   WP_012130756.1    Uniprot ID   A0AAQ2V108
Organism   Streptococcus gordonii strain FDAARGOS 1455     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 472217..483140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L85_RS02440 (I6L85_02440) amiC 473708..475204 (+) 1497 WP_008809624.1 ABC transporter permease Regulator
  I6L85_RS02445 (I6L85_02445) amiD 475204..476130 (+) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator
  I6L85_RS02450 (I6L85_02450) amiE 476139..477206 (+) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  I6L85_RS02455 (I6L85_02455) amiF 477217..478140 (+) 924 WP_012130756.1 ATP-binding cassette domain-containing protein Regulator
  I6L85_RS02460 (I6L85_02460) comR/comR2 478342..478824 (+) 483 WP_045772576.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34922.14 Da        Isoelectric Point: 6.7109

>NTDB_id=580263 I6L85_RS02455 WP_012130756.1 477217..478140(+) (amiF) [Streptococcus gordonii strain FDAARGOS 1455]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFINRGETFSLVGESGSGKTTIGRAIIGLNETSKGEIFFDGKQINGKKSRK
ESSEIIRKIQMIFQDPAASLNERATVDYIISEGLYNYHLFENEEERIQKVKNIIHEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPDQHDYSVEKPEMVEIKPGHFVWANKTEVENYKKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=580263 I6L85_RS02455 WP_012130756.1 477217..478140(+) (amiF) [Streptococcus gordonii strain FDAARGOS 1455]
ATGTCTGAAAAATTAGTAGAAGTTAAAGATTTGGAGATTTCCTTTGGTGAAGGGAAGAAGAAATTTGTAGCTGTTAAAAA
TGCAAATTTCTTTATTAATAGAGGAGAAACTTTCTCACTCGTAGGTGAATCCGGCTCAGGGAAAACTACAATCGGTCGCG
CAATCATTGGTTTGAATGAGACGAGTAAAGGTGAAATCTTCTTTGATGGAAAGCAGATTAATGGGAAGAAGTCTAGAAAA
GAATCTTCGGAAATTATTCGTAAGATTCAAATGATATTCCAGGATCCTGCTGCGAGCTTAAACGAGCGTGCAACAGTTGA
CTATATCATTTCTGAGGGCTTGTACAACTATCACTTGTTTGAAAATGAAGAAGAAAGAATACAAAAGGTTAAAAATATTA
TTCATGAAGTTGGATTGCTTTCCGAACATTTGACGCGTTATCCGCATGAATTTTCAGGAGGACAACGTCAACGTATTGGG
ATAGCGCGCGCTTTAGTCATGCAACCAGATTTCGTTATTGCTGATGAACCAATTTCTGCTTTGGATGTATCCGTTCGTGC
TCAAGTCCTAAACCTTCTAAAGAAATTTCAAAAAGAGTTGGGGTTAACCTATCTATTCATCGCTCACGATTTGTCAGTGG
TACGCTTCATTTCAGATCGTATCGCAGTTATCTATAAAGGTGTTATTGTTGAAGTTGCTGAAACAGAAGAGCTCTTTAAC
AATCCAATTCATCCTTATACCAAATCGTTATTATCAGCTGTTCCAATTCCAGATCCAATCTTGGAGCGTAAAAAAGTACT
TAAAGTTTACGATCCGGATCAACATGACTATTCAGTTGAAAAACCTGAAATGGTTGAAATTAAACCTGGCCACTTTGTTT
GGGCTAACAAAACTGAAGTAGAGAACTATAAAAAAGAACTCTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

86.601

99.674

0.863
  amiF Streptococcus thermophilus LMD-9

86.275

99.674

0.86
  amiF Streptococcus salivarius strain HSISS4

85.621

99.674

0.853