Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   SPN034156_RS04630 Genome accession   NC_021006
Coordinates   855622..856632 (-) Length   336 a.a.
NCBI ID   WP_000990606.1    Uniprot ID   -
Organism   Streptococcus pneumoniae SPN034156     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 850622..861632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPN034156_RS04600 (SPN034156_08330) - 850687..851901 (-) 1215 WP_000666469.1 pyridoxal phosphate-dependent aminotransferase -
  SPN034156_RS04605 (SPN034156_08340) - 852057..852350 (-) 294 WP_000977365.1 hypothetical protein -
  SPN034156_RS04610 (SPN034156_08350) - 852512..852964 (+) 453 WP_000079148.1 universal stress protein -
  SPN034156_RS04615 (SPN034156_08360) - 852999..854387 (-) 1389 WP_000453139.1 Cof-type HAD-IIB family hydrolase -
  SPN034156_RS04620 (SPN034156_08370) - 854453..855415 (+) 963 WP_001124777.1 asparaginase -
  SPN034156_RS12240 - 855412..855558 (-) 147 WP_001092026.1 hypothetical protein -
  SPN034156_RS04630 (SPN034156_08380) ccpA 855622..856632 (-) 1011 WP_000990606.1 catabolite control protein A Regulator
  SPN034156_RS04635 (SPN034156_08390) - 857057..857656 (-) 600 WP_000866730.1 response regulator transcription factor -
  SPN034156_RS04640 (SPN034156_08400) - 857658..858755 (-) 1098 WP_000893542.1 sensor histidine kinase -
  SPN034156_RS04645 (SPN034156_08410) - 858755..859492 (-) 738 WP_001842303.1 ABC transporter permease -
  SPN034156_RS04650 (SPN034156_08420) - 859494..860378 (-) 885 WP_001055986.1 ABC transporter ATP-binding protein -
  SPN034156_RS04655 (SPN034156_08430) - 860365..860559 (-) 195 WP_000710384.1 hypothetical protein -
  SPN034156_RS04660 (SPN034156_08440) - 860556..860762 (-) 207 WP_000503441.1 hypothetical protein -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37042.99 Da        Isoelectric Point: 5.3212

>NTDB_id=58021 SPN034156_RS04630 WP_000990606.1 855622..856632(-) (ccpA) [Streptococcus pneumoniae SPN034156]
MNADDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNITNGYFS
SLAKGIDDIAEMYKYNIVLANSDEDNEKEVSVVNTLFSKQVDGIIYMGYHLTDKIRSEFSRSRTPIVLAGTVDVEHQLPS
VNIDYKQATIDAVSYLAKENERIAFVSGPLVDDINGKVRLVGYKETLKKAGIAYSEGLVFESKYSYDDGYALAERLISSN
ATAAVVTGDELAAGVLNGLADKGVSVPEDFEIITSDDSQISRFTRPNLTTIAQPLYDLGAISMRMLTKIMHKEELEEREV
LLPHGLTERSSTRKRK

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=58021 SPN034156_RS04630 WP_000990606.1 855622..856632(-) (ccpA) [Streptococcus pneumoniae SPN034156]
ATGAATGCAGATGATACAGTAACCATTTATGATGTCGCTCGTGAAGCAGGTGTTTCCATGGCGACGGTCAGCCGTGTGGT
CAATGGCAATAAAAATGTAAAAGAGAATACCCGTAAAAAAGTGCTAGAGGTAATTGATCGTTTGGATTATCGTCCAAATG
CAGTTGCGCGTGGTCTTGCAAGTAAAAAGACAACCACTGTCGGTGTCGTGATTCCAAATATTACCAATGGTTATTTTTCG
AGTTTGGCTAAGGGGATTGATGATATTGCAGAAATGTACAAGTACAATATTGTCCTAGCTAATAGCGATGAAGATAACGA
GAAAGAAGTTTCTGTTGTCAATACCCTCTTTTCAAAGCAGGTAGATGGCATTATCTATATGGGTTATCACTTGACAGATA
AAATTCGCTCAGAATTTTCGCGTTCACGTACTCCGATTGTTCTCGCAGGAACTGTCGATGTTGAGCACCAGTTGCCAAGT
GTCAATATTGACTATAAGCAAGCAACAATTGATGCAGTGAGTTACCTTGCTAAAGAAAATGAGCGTATTGCTTTCGTTAG
CGGTCCGCTAGTGGATGACATCAATGGTAAGGTTCGTTTAGTTGGCTACAAGGAAACCTTGAAAAAAGCAGGAATCGCTT
ATAGTGAGGGTTTGGTATTTGAATCTAAATATAGCTATGATGATGGTTACGCCTTAGCAGAGCGTTTGATTTCATCAAAT
GCAACTGCAGCAGTTGTGACAGGTGATGAGTTGGCAGCAGGAGTCTTGAACGGTTTGGCTGATAAGGGTGTTTCTGTGCC
AGAAGATTTTGAAATTATTACTAGTGATGATTCACAAATCTCACGCTTTACCCGTCCAAACTTGACAACGATTGCCCAAC
CTCTTTATGACCTTGGTGCCATTAGTATGCGTATGTTGACCAAGATTATGCATAAGGAAGAGTTGGAAGAACGTGAAGTT
CTCTTACCTCATGGTTTGACAGAACGTAGCTCAACACGAAAACGTAAATAG

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(181-332)

Bacterial regulatory proteins, lacI family (LacI)

(8-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

99.405

100

0.994
  ccpA Streptococcus gordonii str. Challis substr. CH1

87.126

99.405

0.866
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

57.704

98.512

0.568

Multiple sequence alignment