Detailed information NTG0580178

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I6L29_RS14195
• Genome accession: NZ_CP077238
• Coordinates: 3011866..3012726 (+)
• Length: 286 a.a.
• NCBI ID: WP_005079345.1
• Uniprot ID: -
• Organism: Acinetobacter pittii strain FDAARGOS 1399
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3006866..3017726

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6L29_RS14175 (I6L29_14175)	secG	3007473..3007802 (-)	330	WP_002115012.1	preprotein translocase subunit SecG	-
I6L29_RS14180 (I6L29_14180)	tpiA	3007815..3008609 (-)	795	WP_005079338.1	triose-phosphate isomerase	-
I6L29_RS14185 (I6L29_14185)	pilB	3008901..3010613 (+)	1713	WP_005079341.1	type IV-A pilus assembly ATPase PilB	Machinery gene
I6L29_RS14190 (I6L29_14190)	pilC	3010640..3011866 (+)	1227	WP_005079343.1	type II secretion system F family protein	Machinery gene
I6L29_RS14195 (I6L29_14195)	pilD	3011866..3012726 (+)	861	WP_005079345.1	prepilin peptidase	Machinery gene
I6L29_RS14200 (I6L29_14200)	coaE	3012728..3013324 (+)	597	WP_005065869.1	dephospho-CoA kinase	-
I6L29_RS14205 (I6L29_14205)	-	3013321..3014235 (-)	915	WP_005079347.1	DMT family transporter	-
I6L29_RS14210 (I6L29_14210)	rlmB	3014271..3015020 (-)	750	WP_005079348.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
I6L29_RS14215 (I6L29_14215)	-	3015123..3015449 (-)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
I6L29_RS14220 (I6L29_14220)	-	3015526..3016836 (-)	1311	WP_002114682.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32183.67 Da
• Isoelectric Point: 7.1044

>NTDB_id=580178 I6L29_RS14195 WP_005079345.1 3011866..3012726(+) (pilD) [Acinetobacter pittii strain FDAARGOS 1399]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIEHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=580178 I6L29_RS14195 WP_005079345.1 3011866..3012726(+) (pilD) [Acinetobacter pittii strain FDAARGOS 1399]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTTGCACTGTTGAGCCTATGTATTGG
TAGCTTTTTGAATGTGGTGATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA
ATCCCGAACAACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCAGTTATAAGTTGGTTAATGTTAAGAGGAAAATGTGGCCATTGCCAACATCCTATTAG
CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA
TGCTTTGGGGGCTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT
TTCACCCTACCTTTGGCCGCTCTCGGCTTAGGTATTAATACCTTTAATATTTACACCTCGCCTAACTCAGCTATTTGGGG
ATATTTAATCGGCTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTACTTGCCGCATTAGGCGCGTGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTTGGTGCAATTATTGGCATCATTTTATTAAAATTACGCAATGACAATCAGCCCTTTGCCTTTGGGCCCTACATTGCCAT
TGCAGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	96.853	100	0.969
pilD	Acinetobacter nosocomialis M2	96.503	100	0.965
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.328	91.608	0.434