Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   I6L27_RS13745 Genome accession   NZ_CP077232
Coordinates   2915288..2916700 (+) Length   470 a.a.
NCBI ID   WP_216967444.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1397     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2910288..2921700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L27_RS13725 (I6L27_13730) thrC 2910538..2911677 (+) 1140 WP_002048893.1 threonine synthase -
  I6L27_RS13730 (I6L27_13735) pbpG 2911790..2912836 (-) 1047 WP_016144106.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  I6L27_RS13735 (I6L27_13740) gacA 2913049..2913684 (+) 636 WP_002121174.1 response regulator -
  I6L27_RS13740 (I6L27_13745) pilS 2913695..2915263 (+) 1569 WP_062848691.1 sensor histidine kinase Regulator
  I6L27_RS13745 (I6L27_13750) pilR 2915288..2916700 (+) 1413 WP_216967444.1 sigma-54-dependent transcriptional regulator Regulator
  I6L27_RS13750 (I6L27_13755) ctpA 2916704..2917888 (-) 1185 WP_216967445.1 S41 family peptidase -
  I6L27_RS13755 (I6L27_13760) gpmI 2917904..2919451 (-) 1548 WP_216967446.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  I6L27_RS13760 (I6L27_13765) lptG 2919578..2920648 (-) 1071 WP_016144101.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 52599.72 Da        Isoelectric Point: 6.5582

>NTDB_id=580080 I6L27_RS13745 WP_216967444.1 2915288..2916700(+) (pilR) [Acinetobacter pittii strain FDAARGOS 1397]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVKHVSQTYPHTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKPEHEFGGTTLENDLLIGRSPPIQNLRTAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGAFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLTMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVQQGKFRQDLFFRIHVMDIMLPPLRDRGGDILL
LANHFIQKVCTEWGISNKQLTASAETYLLQQDFPGNVRELRNMIERAITLSDDECIDLTHLAPPLRGSSVSPQIVTKQLN
QTPTVQTHPKFPMEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEMGEEV

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=580080 I6L27_RS13745 WP_216967444.1 2915288..2916700(+) (pilR) [Acinetobacter pittii strain FDAARGOS 1397]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTGTTAATGCAAATGACTCTTGCACG
AATGGGGATTAAGACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTTACTCAGTTTCATTACGATGCATGCT
TGACCGATTTAAATCTACCTGACGGTAGTGGTTTAGAATTGGTTAAACATGTTTCTCAAACTTACCCCCACACCCCCATT
GCAGTTTTAACTGCATACGGAAATATGGACATTGCAATTGCTGCATTAAAAGCGGGAGCTTTTGATTTTGTTAGCAAACC
GATTAACCAAATTCATTTAGATCAGTTGTTAAAAAAGGCGCTTAACCAACCAAAACCAGAGCATGAGTTTGGTGGAACAA
CATTAGAAAATGACTTATTAATTGGGCGTTCACCACCGATACAAAACTTACGGACAGCTATTAAAAAAATAGCCCGCTCC
CAAGCGCCTGTATTTGTTACAGGCGAGTCTGGTACGGGTAAAGAAGTTGTTGCCAATCTTATTCACCGCTTAAGCAACCG
CAGTGAAGGAGCATTTATTGCAATTAACTGTGGAGCAATCCCAACTGAGCTCATGGAAAGTGAACTTTTCGGGCATAAAA
AAGGGAGCTTTACTGGCGCGACTCAAGACAAACAAGGTCTTATTTTATCGGCACACGGCGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTGCCGTTAACCATGCAAGTTAAATTGCTTCGCGCAGTACAAGAGAAAAAAATTCGCCCAGTAGGTTCTGA
TCAGGAAATTGATGTTGATTTTCGAGTAATTAGTGCGAGTCACCAAGATTTAGATTTGTTAGTCCAACAAGGTAAATTCC
GTCAGGACTTATTTTTCCGTATTCATGTTATGGATATTATGTTGCCGCCACTGCGTGACCGTGGTGGAGATATTTTGCTA
TTGGCCAACCATTTTATTCAAAAGGTTTGTACGGAATGGGGAATTTCAAACAAGCAATTAACGGCGAGTGCTGAAACTTA
TTTATTACAGCAAGACTTTCCGGGTAATGTGCGTGAATTAAGAAATATGATTGAACGAGCTATTACTTTAAGTGATGATG
AATGTATTGATTTAACACATTTAGCACCTCCTCTTAGAGGTAGTAGTGTGAGCCCGCAAATCGTAACGAAACAATTAAAT
CAAACACCAACTGTTCAGACTCATCCAAAATTTCCAATGGAAGGTTTAGAACGCTACTTAGAAAATATCGAAAAAGATAT
TTTACTGAATGCATTAAACATGACGCATTGGAATCGAACTTTGGCAGCTAAAAAGCTGGGAATGACATTCCGTTCTTTGC
GCTATCGACTCAAAAAGTTTGGTTTGGATACTGAAATGGGAGAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

85.412

100

0.86
  pilR Pseudomonas aeruginosa PAK

50

97.021

0.485