Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   I6L27_RS13740 Genome accession   NZ_CP077232
Coordinates   2913695..2915263 (+) Length   522 a.a.
NCBI ID   WP_062848691.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1397     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2908695..2920263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L27_RS13720 (I6L27_13725) hom 2909182..2910483 (+) 1302 WP_002121263.1 homoserine dehydrogenase -
  I6L27_RS13725 (I6L27_13730) thrC 2910538..2911677 (+) 1140 WP_002048893.1 threonine synthase -
  I6L27_RS13730 (I6L27_13735) pbpG 2911790..2912836 (-) 1047 WP_016144106.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  I6L27_RS13735 (I6L27_13740) gacA 2913049..2913684 (+) 636 WP_002121174.1 response regulator -
  I6L27_RS13740 (I6L27_13745) pilS 2913695..2915263 (+) 1569 WP_062848691.1 sensor histidine kinase Regulator
  I6L27_RS13745 (I6L27_13750) pilR 2915288..2916700 (+) 1413 WP_216967444.1 sigma-54-dependent transcriptional regulator Regulator
  I6L27_RS13750 (I6L27_13755) ctpA 2916704..2917888 (-) 1185 WP_216967445.1 S41 family peptidase -
  I6L27_RS13755 (I6L27_13760) gpmI 2917904..2919451 (-) 1548 WP_216967446.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59033.72 Da        Isoelectric Point: 6.7160

>NTDB_id=580079 I6L27_RS13740 WP_062848691.1 2913695..2915263(+) (pilS) [Acinetobacter pittii strain FDAARGOS 1397]
MQFPINSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDTSLQQPALYSYTLLGYSLLSLLQLLCFKFIATQATKQ
LILFFVVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLVITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYNIVLSNPAACSLLGIPPQFASE
KYPLAKWHADLFEILKFDNLKEGDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDLEQQNTLRRMIGKQTKRIDSIVQDTLGLARSERTYPIQIELNDFIKTLLDEDLSDVK
HAIQLKSSDLSLKILFDEKQLRQVLINLVRNALRHNAPDSPYVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIACPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=580079 I6L27_RS13740 WP_062848691.1 2913695..2915263(+) (pilS) [Acinetobacter pittii strain FDAARGOS 1397]
ATGCAATTTCCCATAAACTCATCCTTGTCCCATACGATATTTCGTTTGGGCACGTGGTATGGTTTATATCGCCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCGATGCTCAAATCGACACTAGTCTACAACAACCCGCTTTATATTCTT
ATACACTACTCGGCTATTCGCTCTTAAGCCTTCTTCAACTTTTATGCTTTAAGTTTATTGCCACTCAGGCAACAAAGCAG
CTCATTTTATTTTTTGTAGTTGATATTATCTGTCTGAGTTTACTTACATTTTCTGTAGGTGAACCAAATTTACAACTCAG
CTTGCTCTATGTTATTGCCATATTTACTTCAGCAATTTTACTTAGCGCAAGAATGTCGCTGGTCATTACATTACTTGCAG
TTATTGCGGTTATTTACCAACGCTTCGTTGGCAGTTTATTTGACTACAATAATTTAAATACGATTGGTAACAGCGCCTTA
TTGGCTTTCTTGTTTTTCGTGGTACACGGCATCGGACAAATTGCGGTCCAGCGCTTTAAGTTACTTGAGGCACTGACTTT
CCACCAATCAATAGAACTCTATCAATTACAAAATATTAACCGCTATATTTTGGAACAAATTGAAGAGGGCTATTTAGTTC
TAGATGAAAACTACAACATTGTTTTAAGCAACCCAGCAGCATGTTCACTTTTAGGGATTCCACCTCAATTTGCCAGTGAA
AAATATCCCTTAGCTAAATGGCATGCTGACTTATTTGAAATTCTTAAGTTTGATAACCTAAAAGAAGGTGACCGATTTAT
TTTTGAGTCTCGGCTTTCGGCCTACTCTATTAATATTAAAGTGCAGCATCTTTTAGTACCACAACAAGCGTTGACGCTAC
TCATTTTACAAGATGCGCAGCAAATTAATCAGCAAGCTCAACAACTCAAACTTGCCGCTTTAGGGCAACTCTCAGCAAGT
ATTGCCCATGAAATCCGTAATCCTCTTGCAGCGATTGTGCAAGCAAATGAACTACTTAAAGACAGTGATTTAGAACAACA
AAATACTTTACGCCGTATGATTGGCAAGCAAACCAAACGCATTGATAGTATTGTCCAAGACACGTTAGGGCTTGCCCGTA
GTGAAAGAACATATCCAATCCAGATTGAATTAAACGACTTCATAAAAACGTTATTAGATGAAGATTTATCTGATGTTAAA
CATGCGATCCAGCTTAAAAGCTCTGATTTATCTTTAAAGATATTGTTTGATGAAAAGCAGCTCAGACAAGTGCTGATTAA
CCTTGTTAGAAATGCTTTACGACACAATGCACCCGACTCGCCCTATGTTCTGATCAATATTCACTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGGGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTTACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCCGAATAGCGTGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(203-250)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-517)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

93.87

100

0.939