Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   I6L84_RS01905 Genome accession   NZ_CP077224
Coordinates   359277..360281 (+) Length   334 a.a.
NCBI ID   WP_048775076.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1454     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 354277..365281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L84_RS01885 (I6L84_01885) - 354684..355712 (-) 1029 WP_060553999.1 ABC transporter substrate-binding protein -
  I6L84_RS01890 (I6L84_01890) - 355768..356523 (-) 756 WP_060553998.1 ABC transporter ATP-binding protein -
  I6L84_RS01895 (I6L84_01895) - 356525..357571 (-) 1047 WP_060553997.1 iron ABC transporter permease -
  I6L84_RS01900 (I6L84_01900) - 358030..359112 (-) 1083 WP_060553996.1 Xaa-Pro peptidase family protein -
  I6L84_RS01905 (I6L84_01905) ccpA 359277..360281 (+) 1005 WP_048775076.1 catabolite control protein A Regulator
  I6L84_RS01910 (I6L84_01910) - 360426..361424 (+) 999 WP_060954917.1 glycosyltransferase family 4 protein -
  I6L84_RS01915 (I6L84_01915) - 361426..362739 (+) 1314 WP_060553994.1 glycosyltransferase family 4 protein -
  I6L84_RS01920 (I6L84_01920) - 362775..363140 (+) 366 WP_060553993.1 hypothetical protein -
  I6L84_RS01925 (I6L84_01925) - 363408..364034 (+) 627 WP_196755809.1 AAA family ATPase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37105.21 Da        Isoelectric Point: 6.8837

>NTDB_id=580004 I6L84_RS01905 WP_048775076.1 359277..360281(+) (ccpA) [Streptococcus gordonii strain FDAARGOS 1454]
MNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPSITNSYFS
TLAKGIDDIAEMYKYNIVLANSDEDDDKEVSVVNTLFSKQVDGIIFMGYHLTEKIRSEFSRSRTPVVLAGTIDVEHQLPS
VNIDYKQATIDAITFLAKRNKKIAFVCGPLVDDINGKVRLSGYKTALKSKKLSYSEGLVFESKYSYDDGYNLAERVIASK
ATAAFVTGDELAAGLLNGLADRGVKIPEDFEIITSDDSQISRYTRPNLSTISQPLYDLGAISMRMLTKIMHKEELEEREV
VLSHGIYERNSTRK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=580004 I6L84_RS01905 WP_048775076.1 359277..360281(+) (ccpA) [Streptococcus gordonii strain FDAARGOS 1454]
ATGAACACAGACGATACAGTAACCATTTATGATGTCGCCCGTGAAGCAGGGGTTTCTATGGCGACAGTTAGTCGTGTAGT
TAATGGAAACAAGAATGTAAAAGAAAACACTCGGAAAAAAGTTTTGGAAGTAATTGATCGCCTTGATTATCGTCCAAATG
CAGTGGCTCGCGGTTTGGCTAGCAAGAAGACTACAACAGTTGGAGTCGTGATTCCAAGCATTACAAATAGTTATTTCTCA
ACACTGGCTAAGGGAATTGATGATATTGCTGAGATGTATAAATACAATATCGTCCTAGCAAATAGTGACGAGGATGATGA
TAAGGAAGTTTCAGTTGTAAATACTCTCTTTTCTAAGCAAGTAGATGGTATTATCTTTATGGGTTACCACCTTACAGAAA
AGATTCGTTCAGAATTTTCTCGTTCACGCACGCCAGTTGTCTTGGCTGGAACTATTGATGTGGAGCACCAATTGCCAAGT
GTTAATATAGATTATAAACAGGCTACGATTGACGCTATCACATTCCTTGCTAAGCGCAATAAAAAAATTGCTTTTGTATG
CGGACCTTTAGTTGATGATATCAATGGAAAAGTACGCTTATCCGGTTATAAAACGGCTCTTAAGAGCAAAAAGCTGTCAT
ACAGCGAAGGTCTTGTCTTTGAGTCTAAGTACAGCTATGATGATGGTTATAATTTAGCTGAACGAGTAATTGCTTCTAAA
GCAACGGCTGCTTTTGTGACAGGTGATGAGCTGGCAGCTGGTCTTTTAAACGGACTAGCTGATCGCGGAGTAAAAATTCC
AGAGGATTTTGAAATTATCACTAGCGATGATTCACAAATATCTCGCTATACACGTCCAAATTTGTCAACTATCAGCCAGC
CTTTATATGATTTAGGTGCTATTAGTATGCGTATGCTGACTAAGATTATGCACAAAGAAGAGTTGGAAGAACGTGAAGTT
GTTCTGTCTCATGGTATTTACGAACGTAACTCAACTAGAAAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(175-332)

Bacterial regulatory proteins, lacI family (LacI)

(8-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

99.401

100

0.994
  ccpA Streptococcus pneumoniae D39

87.126

100

0.871
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

57.1

99.102

0.566