Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   I6L28_RS00160 Genome accession   NZ_CP077205
Coordinates   29353..29757 (-) Length   134 a.a.
NCBI ID   WP_216946655.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1398     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 24353..34757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L28_RS00130 (I6L28_00130) - 24437..24706 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  I6L28_RS00135 (I6L28_00135) rapZ 24703..25554 (-) 852 WP_002117179.1 RNase adapter RapZ -
  I6L28_RS00140 (I6L28_00140) panC 25578..26426 (-) 849 WP_216946654.1 pantoate--beta-alanine ligase -
  I6L28_RS00145 (I6L28_00145) panB 26430..27239 (-) 810 WP_002117298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  I6L28_RS00150 (I6L28_00150) folK 27285..27767 (-) 483 WP_171430337.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  I6L28_RS00155 (I6L28_00155) pcnB 27764..29227 (-) 1464 WP_016144357.1 polynucleotide adenylyltransferase PcnB -
  I6L28_RS00160 (I6L28_00160) comEA 29353..29757 (-) 405 WP_216946655.1 ComEA family DNA-binding protein Machinery gene
  I6L28_RS00165 (I6L28_00165) mazG 29726..30532 (-) 807 WP_216946656.1 nucleoside triphosphate pyrophosphohydrolase -
  I6L28_RS00170 (I6L28_00170) - 30645..31418 (+) 774 WP_062849721.1 SDR family oxidoreductase -
  I6L28_RS00175 (I6L28_00175) relA 31467..33773 (-) 2307 WP_002117181.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15427.63 Da        Isoelectric Point: 10.4458

>NTDB_id=579758 I6L28_RS00160 WP_216946655.1 29353..29757(-) (comEA) [Acinetobacter pittii strain FDAARGOS 1398]
MQLSMNLWKNKHYIFITLFWSLISSTFVQAQSFDQNFREWKAKQQIYDQKLSMQHSSHSSVSKSSAMTDSSGQIHLNQAN
LDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKARLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=579758 I6L28_RS00160 WP_216946655.1 29353..29757(-) (comEA) [Acinetobacter pittii strain FDAARGOS 1398]
ATGCAGCTCAGCATGAATCTTTGGAAGAATAAACACTATATTTTTATTACTCTATTTTGGAGCCTGATTTCATCAACCTT
TGTTCAGGCTCAATCTTTTGATCAAAATTTTAGGGAGTGGAAGGCTAAGCAACAGATATACGATCAGAAGTTGAGTATGC
AACATTCCTCTCATTCTAGTGTTTCAAAAAGCTCAGCTATGACTGATTCGTCAGGGCAAATTCACTTGAATCAAGCTAAT
CTTGATGAGCTGCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCGATTGTGGAATACCGTCAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGCATTGGTCCAGCCATTTTTGAAAAGAATAAAGCACGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

68.613

100

0.701
  comEA Acinetobacter baumannii D1279779

68.613

100

0.701
  comEA Acinetobacter baylyi ADP1

43.548

92.537

0.403