Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MUA18_RS08405 Genome accession   NZ_CP094780
Coordinates   1734264..1734866 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain IVB6173     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1729264..1739866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA18_RS08385 (MUA18_08380) yajC 1730760..1731020 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  MUA18_RS08390 (MUA18_08385) tgt 1731039..1732178 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  MUA18_RS08395 (MUA18_08390) queA 1732201..1733226 (-) 1026 WP_001019179.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  MUA18_RS08400 (MUA18_08395) ruvB 1733228..1734232 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  MUA18_RS08405 (MUA18_08400) ruvA 1734264..1734866 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  MUA18_RS08410 (MUA18_08405) - 1734880..1735335 (-) 456 WP_000368902.1 ACT domain-containing protein -
  MUA18_RS08415 (MUA18_08410) obgE 1735348..1736640 (-) 1293 WP_000496098.1 GTPase ObgE -
  MUA18_RS08420 (MUA18_08415) rpmA 1737654..1737938 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  MUA18_RS08425 (MUA18_08420) - 1737950..1738270 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  MUA18_RS08430 (MUA18_08425) rplU 1738276..1738584 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  MUA18_RS08435 (MUA18_08430) mreD 1739003..1739533 (-) 531 WP_262542979.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=579604 MUA18_RS08405 WP_000271547.1 1734264..1734866(-) (ruvA) [Staphylococcus aureus strain IVB6173]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=579604 MUA18_RS08405 WP_000271547.1 1734264..1734866(-) (ruvA) [Staphylococcus aureus strain IVB6173]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTACGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTTTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425